Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_A16
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      27   0.12 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    27   0.16 

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 359 HFQYHRQDSLAXKPELNAPAPDV 427
           H  YH  DS+  KPE+    PDV
Sbjct: 161 HQSYHHMDSVEYKPEIMEYKPDV 183


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 530 FSPQALFGYRIIVICSSIRGLMFRPWTTLIW 438
           FSP +L G  ++++CS+     F+PW    W
Sbjct: 534 FSPLSLLGGPLVMVCSA-PVWRFQPWGPFTW 563


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,407
Number of Sequences: 438
Number of extensions: 3067
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)