Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP09_F_A11
(633 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPB21E7.09 ||SPAPB21E7.09, SPAPB21E7.09|L-asparaginase |Schizo... 30 0.32
SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr 1|||M... 30 0.32
SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|... 27 1.7
SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|... 27 2.3
SPAC1486.08 |||mitochondrial inner membrane protein involved in ... 26 3.9
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 26 5.2
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch... 25 6.9
SPBC409.09c |mis13|cnl1|kinetochore protein Mis13|Schizosaccharo... 25 6.9
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy... 25 6.9
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 9.1
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 25 9.1
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 25 9.1
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca... 25 9.1
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 25 9.1
SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomy... 25 9.1
>SPBPB21E7.09 ||SPAPB21E7.09, SPAPB21E7.09|L-asparaginase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 360
Score = 29.9 bits (64), Expect = 0.32
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -3
Query: 532 CPPCMFQKRLSNISSELGFNFAVSCVS 452
C P +FQKR SN+S + FN ++ V+
Sbjct: 16 CQPLLFQKRSSNVSDFISFNASLPNVT 42
>SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 360
Score = 29.9 bits (64), Expect = 0.32
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -3
Query: 532 CPPCMFQKRLSNISSELGFNFAVSCVS 452
C P +FQKR SNIS + FN ++ V+
Sbjct: 16 CQPFLFQKRSSNISDFISFNASLPNVT 42
>SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 104
Score = 27.5 bits (58), Expect = 1.7
Identities = 8/28 (28%), Positives = 18/28 (64%)
Frame = -2
Query: 287 RRFYFMKSIVKICGYVYIVALTWLVGVT 204
+ +F+K+I+ + Y+Y++ W+V T
Sbjct: 27 KNMFFLKNIIVLSNYLYLLYKAWIVCTT 54
>SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|chr
3|||Manual
Length = 258
Score = 27.1 bits (57), Expect = 2.3
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Frame = -2
Query: 485 TWF*FCSLVCLRSNVFLSLNFFSKTLALWIAAV-ISTSFSSCGYKGV-HVLFNWD 327
T F F LVC + +FL+ + + T A+ + + ++ +CG KG+ H L W+
Sbjct: 111 TLFGFWCLVCTLALIFLTYFYETWTKAVKVTVIFLAQCVKACG-KGIKHFLKKWE 164
>SPAC1486.08 |||mitochondrial inner membrane protein involved in
cytochrome c oxidase assembly Cox16|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 113
Score = 26.2 bits (55), Expect = 3.9
Identities = 8/16 (50%), Positives = 14/16 (87%)
Frame = -3
Query: 85 LFYKHKTWYTLRSRKA 38
LFY+ K+WY L+++K+
Sbjct: 2 LFYRFKSWYRLQAKKS 17
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 25.8 bits (54), Expect = 5.2
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -3
Query: 589 HKISH*HHKEEAQ-FK*L*KCPPCMFQKRLSNISSELGFNFAVSCV 455
H I+ + +EAQ +K + KC C F S + G F +C+
Sbjct: 619 HLINQAYETQEAQVYKGMLKCSVCNFSNWKSKLIPNCGHAFCSNCM 664
>SPAP8A3.14c |||mitochondrial inner membrane protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 677
Score = 25.4 bits (53), Expect = 6.9
Identities = 8/30 (26%), Positives = 16/30 (53%)
Frame = -3
Query: 118 SYLVFLNXLKTLFYKHKTWYTLRSRKAESK 29
SY+ + + L + HK W+ + + + SK
Sbjct: 622 SYITYSDIFSPLSHSHKDWFRIHTEENSSK 651
>SPBC409.09c |mis13|cnl1|kinetochore protein
Mis13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 329
Score = 25.4 bits (53), Expect = 6.9
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 450 PETHETAKLKPSSEDILESLFWNIHGGH 533
PE +KLKP +L+ L NIH H
Sbjct: 245 PELPNISKLKPKFHTLLDMLAENIHTLH 272
>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 411
Score = 25.4 bits (53), Expect = 6.9
Identities = 15/65 (23%), Positives = 31/65 (47%)
Frame = +3
Query: 300 MATDCEMQEVPIEKNVNTLVTTARKRSADNSGYPQSKRFREEVQRKKNIGPETHETAKLK 479
++ D ++ +PI K ++ K S+ + K EE+ +++ E E + L+
Sbjct: 123 ISKDLKILRLPIRKQIS-------KDSSQSQNVDSGKTNHEEIHESRHLQTEIEEPSGLE 175
Query: 480 PSSED 494
SSE+
Sbjct: 176 ESSEE 180
>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 25.0 bits (52), Expect = 9.1
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -1
Query: 450 VQCF-SFFELLLENACSVDSRCYQHFF 373
+ CF SFF LLL CS+ S HFF
Sbjct: 38 ILCFLSFFALLLHLPCSIYSHTL-HFF 63
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 4 TLGSKHYSVLIRLSSNEVYTTFC 72
T G KH ++L +L ++V T FC
Sbjct: 44 TSGQKHSALLSKLKRSKVTTDFC 66
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 25.0 bits (52), Expect = 9.1
Identities = 26/115 (22%), Positives = 41/115 (35%)
Frame = +3
Query: 189 PAPICGDANQPGQCHNVHISTNFYYGFHEVKTSGINHMATDCEMQEVPIEKNVNTLVTTA 368
P+ + + PG V+ NFY GI+H + E+Q + +T + +
Sbjct: 78 PSSLSRKDSGPGDGLEVNKKNNFYRRSSSTDDFGISHARSRKEIQSL---GRPHTRQSFS 134
Query: 369 RKRSADNSGYPQSKRFREEVQRKKNIGPETHETAKLKPSSEDILESLFWNIHGGH 533
++ S YP ++ V PE LK S S NI H
Sbjct: 135 VSDVSNGSSYPNIRKNSVHVNAPMPSFPEGSTAVLLKHHSGSKSASAISNIAPSH 189
>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
catalytic subunit Arm1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 811
Score = 25.0 bits (52), Expect = 9.1
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -1
Query: 582 YHTNITKKKHSLNNYKNVRHVCSRK 508
YH + TKKK Y+ ++++ S K
Sbjct: 717 YHVSATKKKEFTRQYQLLKNISSNK 741
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 25.0 bits (52), Expect = 9.1
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Frame = -1
Query: 594 HFTKYHTNITKKKHSLNNYK-NVRHVCSRKDFPIYLLNLVLILQSRV--SQVQCFSFFEL 424
H Y +N+ + L + ++ + KD P+YLLN L+S + ++ + + E+
Sbjct: 871 HSPIYGSNLIRLAEKLPKHSTSIDYTLYAKDDPLYLLNTTKALRSCILSTEERASNMKEI 930
Query: 423 LLENAC 406
+ AC
Sbjct: 931 IQRFAC 936
>SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 299
Score = 25.0 bits (52), Expect = 9.1
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = -1
Query: 588 TKYHTNITKKKHSLNNYKNVRHVCSRKDFPIYLLNLVL--ILQSRVSQVQCFSFFELLLE 415
+++H+ +++ SL+ N +V R + +N++ L + S+ Q F FF+ LL+
Sbjct: 92 SQFHSRVSQS--SLSRLLNA-YVWKRGALYVQGMNVLASPFLYACKSENQAFQFFDRLLQ 148
Query: 414 NAC 406
N C
Sbjct: 149 NEC 151
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,656,841
Number of Sequences: 5004
Number of extensions: 56051
Number of successful extensions: 175
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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