Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_A11
         (633 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   4.3  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   4.3  
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    22   5.7  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    22   5.7  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   7.5  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   9.9  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +3

Query: 276 VKTSGINHMATDCEMQEVPIEKNVNTLVTTA 368
           V T+GI   A       VPI+K  N   TTA
Sbjct: 532 VGTAGIILQAPTLYDDRVPIDKKFNEFGTTA 562


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +3

Query: 276 VKTSGINHMATDCEMQEVPIEKNVNTLVTTA 368
           V T+GI   A       VPI+K  N   TTA
Sbjct: 532 VGTAGIILQAPTLYDDRVPIDKKFNEFGTTA 562


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 11/19 (57%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = -1

Query: 537 KNVRHVCSRK-DFPIYLLN 484
           KN+R VCS+K D P  LL+
Sbjct: 37  KNLRKVCSKKNDTPKELLD 55


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 11/19 (57%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = -1

Query: 537 KNVRHVCSRK-DFPIYLLN 484
           KN+R VCS+K D P  LL+
Sbjct: 11  KNLRKVCSKKNDTPKELLD 29


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 342 NVNTLVTTARKRSADNSGYPQSK 410
           NVN L+   R  ++DN    Q+K
Sbjct: 573 NVNDLIMNTRCANSDNQNNNQNK 595


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 6/22 (27%), Positives = 12/22 (54%)
 Frame = -1

Query: 366 LWLQGCSRSFQLGLPASHNLLP 301
           +W+  C  +     P++HN+ P
Sbjct: 327 IWITVCVLNVHFRSPSTHNMSP 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,331
Number of Sequences: 438
Number of extensions: 3898
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)