Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_A10
         (419 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   1.1  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   1.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   1.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   1.8  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   1.8  
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    21   4.3  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    21   4.3  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   7.5  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    20   9.9  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    20   9.9  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -1

Query: 350 TTTTPEVIATAIRTLAKGLAPLRRLIFLIYFYSTLF 243
           TT TP+ IA  I   ++ + P+  +IF I ++S ++
Sbjct: 433 TTMTPQEIAQWIDRRSRIVFPVAFIIFNILYWSFIW 468


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 278 LIFLIYFYSTLFSEV 234
           LIF+I FYS L S +
Sbjct: 233 LIFIILFYSRLLSSI 247


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -3

Query: 387 LSFYVRSVKHSINNDDTRSNCY 322
           L  Y RS  H   N + RSN Y
Sbjct: 240 LQKYTRSFAHQSINKEARSNLY 261



 Score = 20.6 bits (41), Expect = 7.5
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 227 ASLFCSLKKSAKS 189
           ASLFC L+K  +S
Sbjct: 234 ASLFCGLQKYTRS 246


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 278 LIFLIYFYSTLFSEV 234
           LIF+I FYS L S +
Sbjct: 233 LIFIILFYSRLLSSI 247


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -3

Query: 387 LSFYVRSVKHSINNDDTRSNCY 322
           L  Y RS  H   N + RSN Y
Sbjct: 235 LQKYTRSFAHQSINKEARSNLY 256



 Score = 20.6 bits (41), Expect = 7.5
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 227 ASLFCSLKKSAKS 189
           ASLFC L+K  +S
Sbjct: 229 ASLFCGLQKYTRS 241


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 205 KNLRKVVSKYKRRPRHRL 152
           KNLRKV SK    P+  L
Sbjct: 37  KNLRKVCSKKNDTPKELL 54


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 205 KNLRKVVSKYKRRPRHRL 152
           KNLRKV SK    P+  L
Sbjct: 11  KNLRKVCSKKNDTPKELL 28


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 278 LIFLIYFYSTLFSEV 234
           +I +IY+YS + S V
Sbjct: 224 MILIIYYYSQIVSHV 238


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 195 EKWFPNINAAQDTDY 151
           E W PN N ++D  Y
Sbjct: 114 EMWNPNTNISEDCLY 128


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 195 EKWFPNINAAQDTDY 151
           E W PN N ++D  Y
Sbjct: 114 EMWNPNTNISEDCLY 128


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,929
Number of Sequences: 438
Number of extensions: 1763
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10750329
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)