Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_A02
         (360 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0988 + 26642247-26642506,26642790-26642872,26643150-266432...    29   1.5  
02_02_0078 + 6587491-6588021,6588160-6589151,6592430-6592607,659...    29   1.5  
08_02_0196 - 14125037-14125175,14125525-14125604,14125938-141264...    27   3.4  
01_06_1164 - 35026345-35026954,35027853-35027939,35028120-350284...    27   4.4  
10_01_0243 + 2538994-2539193,2539297-2539471,2539568-2539726,254...    27   5.9  

>06_03_0988 +
           26642247-26642506,26642790-26642872,26643150-26643238,
           26643478-26643551,26643783-26643833,26644512-26644588,
           26644694-26645313
          Length = 417

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 268 SERYGDNRYPYSGSACLISRXSTYGGTT 351
           S  Y  N  PY+ +A + S  + YGG+T
Sbjct: 365 SNSYSGNNIPYAAAAAMTSGSALYGGST 392


>02_02_0078 +
           6587491-6588021,6588160-6589151,6592430-6592607,
           6592635-6592794,6592992-6593158,6593246-6593869
          Length = 883

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 14/58 (24%), Positives = 26/58 (44%)
 Frame = +2

Query: 56  NTWFGIPATAWRPPSMTSNILSAALWKTLKGP*PXDVGRGGKRSRIAAPVLSSPDLQM 229
           +++ G+P    R  S +   L   +WK + G     + R GK + + +   + PD  M
Sbjct: 430 DSYLGMPTEISRAVSNSFQFLPGRIWKRVNGWTDMPLSRAGKETMLKSVAQAIPDFVM 487


>08_02_0196 -
           14125037-14125175,14125525-14125604,14125938-14126463,
           14126809-14126852,14127444-14127584,14127696-14128463
          Length = 565

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 136 FPQGR*EDIARHRRWSPCCGRNS 68
           F QGR  D++RH R+ P  G N+
Sbjct: 308 FLQGRGNDMSRHERFGPLAGINN 330


>01_06_1164 - 35026345-35026954,35027853-35027939,35028120-35028493,
            35037372-35038586,35038659-35039316,35039331-35041012
          Length = 1541

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 16/53 (30%), Positives = 21/53 (39%)
 Frame = -1

Query: 249  SGDPSFXICKSGEERTGAAIRERFPPRPTSQG*GPFKVFHRAAERILLVIEGG 91
            S  P     + G E+ G A      PRP + G GP     +A  R+     GG
Sbjct: 1145 SAHPHPVSTRPGREQGGEAPEPNGGPRPPTAGAGPPPACPKAQSRLAAAASGG 1197


>10_01_0243 +
           2538994-2539193,2539297-2539471,2539568-2539726,
           2540109-2540205,2540420-2540490,2541196-2541247,
           2541778-2541826,2541965-2542102,2542653-2542772,
           2542861-2542990
          Length = 396

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 96  GGLHAVAGIPNHVFAPNASVSLNS 25
           GGLH + G+P+H+    A  S+ S
Sbjct: 80  GGLHHMLGLPDHILIAAAGDSIES 103


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,965,751
Number of Sequences: 37544
Number of extensions: 201326
Number of successful extensions: 490
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)