Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_A02
         (360 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64858-7|AAB18285.2|  340|Caenorhabditis elegans Hypothetical pr...    27   3.0  
AL021474-5|CAA16307.2|  673|Caenorhabditis elegans Hypothetical ...    26   6.9  

>U64858-7|AAB18285.2|  340|Caenorhabditis elegans Hypothetical
           protein C16D9.6 protein.
          Length = 340

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 20/62 (32%), Positives = 28/62 (45%)
 Frame = +1

Query: 118 LSGPVENLKRPLTLXCWAGWETFTNRCTRSLLARFTNVEARIS*VGKIDHSERYGDNRYP 297
           +S   + L +   L CW    T  +  TRSL    T +       G++  SER+ D R P
Sbjct: 85  VSPAAQRLPKKGKLFCWVQTSTIYHD-TRSLAINETWIHRCDH--GQLFTSERFNDTRIP 141

Query: 298 YS 303
           YS
Sbjct: 142 YS 143


>AL021474-5|CAA16307.2|  673|Caenorhabditis elegans Hypothetical
           protein Y32F6A.2 protein.
          Length = 673

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 86  WRPPSMTSNILSAALW 133
           W PPS+TS I +  LW
Sbjct: 267 WEPPSVTSIICAVCLW 282


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,135,596
Number of Sequences: 27780
Number of extensions: 158066
Number of successful extensions: 338
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 338
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)