Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_A02
         (360 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    24   0.48 
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   4.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   5.9  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   5.9  
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    20   7.7  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    20   7.7  

>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 24.2 bits (50), Expect = 0.48
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 257 FPTQEIRASTFVNLARRERV 198
           FP   I A +F+ L RR+RV
Sbjct: 177 FPALNIVADSFIELIRRQRV 196


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 5/9 (55%), Positives = 8/9 (88%)
 Frame = -3

Query: 106 RHRRWSPCC 80
           RH+++ PCC
Sbjct: 210 RHKKYYPCC 218


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 5/13 (38%), Positives = 10/13 (76%)
 Frame = +2

Query: 83   AWRPPSMTSNILS 121
            +WRPPS  + +++
Sbjct: 1199 SWRPPSQPNGVIT 1211


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 9/23 (39%), Positives = 10/23 (43%)
 Frame = +1

Query: 70  NSGHSMETTFYDEQYPLSGPVEN 138
           N  H M   FY  QY    P+ N
Sbjct: 448 NLNHMMREEFYQSQY--GDPINN 468


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 267 MINFSXSGDPSFXICKSGEERT 202
           ++N      PSF + K+G+E T
Sbjct: 26  LVNTVLQPRPSFELSKNGDEWT 47


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 267 MINFSXSGDPSFXICKSGEERT 202
           ++N      PSF + K+G+E T
Sbjct: 28  LVNTVLQPRPSFELSKNGDEWT 49


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,420
Number of Sequences: 438
Number of extensions: 2064
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8432340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)