Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_P11
         (418 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein L10...    73   2e-14
SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein L10a...    71   5e-14
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    30   0.13 
SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr ...    26   2.0  
SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    26   2.7  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    25   3.6  
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c...    25   3.6  
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone...    25   3.6  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    25   4.7  
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    25   4.7  
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac...    25   6.2  

>SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score = 72.9 bits (171), Expect = 2e-14
 Identities = 34/52 (65%), Positives = 40/52 (76%)
 Frame = +2

Query: 59  SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGHCK 214
           SKVS   +   V  +L+ S++KKRNF ETVELQIGLKNYDPQ+DKRFSG  K
Sbjct: 2   SKVSPANIRSSVETILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIK 53



 Score = 42.3 bits (95), Expect = 3e-05
 Identities = 24/71 (33%), Positives = 28/71 (39%)
 Frame = +3

Query: 204 GTVKLKYIPRPKMQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXX 383
           GT+KL  +PRP M +C+LGD    D AK   V  M                         
Sbjct: 50  GTIKLPNVPRPNMSICILGDAHDLDRAKHGGVDAMSVDDLKKLNKNKKLVKKLAKKYDAF 109

Query: 384 XXSXSLIKQIP 416
             S  LIKQIP
Sbjct: 110 IASEVLIKQIP 120


>SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 216

 Score = 71.3 bits (167), Expect = 5e-14
 Identities = 34/52 (65%), Positives = 41/52 (78%)
 Frame = +2

Query: 59  SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGHCK 214
           SKVS  ++   V  +L+ S++KKRNF ETVELQIGLKNYDPQ+DKRFSG  K
Sbjct: 2   SKVSVASVRSNVEQILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIK 53



 Score = 41.9 bits (94), Expect = 4e-05
 Identities = 24/71 (33%), Positives = 28/71 (39%)
 Frame = +3

Query: 204 GTVKLKYIPRPKMQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXX 383
           GT+KL  +PRP M +C+LGD    D AK   V  M                         
Sbjct: 50  GTIKLPNVPRPNMAICILGDAHDLDRAKHGGVDAMSVDDLKKLNKNKKLVKKLAKKYDAF 109

Query: 384 XXSXSLIKQIP 416
             S  LIKQIP
Sbjct: 110 IASEVLIKQIP 120


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 30.3 bits (65), Expect = 0.13
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
 Frame = +2

Query: 41   LTNKMSSKVSRDTLYE---CVNAVLQSSKDKKRNFLETVELQIGLKNYD-PQKDKRFSG 205
            +T+K++  V ++  Y    C N +++SS   K NF +TV +     +YD P+ D  + G
Sbjct: 920  VTSKLNDLVIKEFTYPSSLCDNVLVRSSPSPKNNFDDTVFISYTSIDYDSPELDSVYEG 978


>SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 122 KKRNFLETVELQIGLKNYDPQKDKRFSGH 208
           +K+N L   E+   L  YDP++  + SGH
Sbjct: 139 EKKNCLSHHEVLTRLDGYDPERGVKVSGH 167


>SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 288

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +2

Query: 2   VFYNLPSVVIGGSLTNKMSSKVSRDTLYECVN-AVLQSSKDKKRNFLETV 148
           ++ ++ S ++   + N+ S K    + ++ +  A LQSS DK  NF +T+
Sbjct: 195 IYQSIKSRLVERYIQNEESVKRPDKSPFDTMTEATLQSSSDKSENFTKTL 244


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
 Frame = +2

Query: 44  TNKMSSKVSRDTLYECVNAVLQSSKDKKRNFLETV-ELQIGLKNYDPQKDKRF-SGHCKA 217
           TNK ++++SR + +  V+ + + +    RN L+++  L   L N   Q D     G   A
Sbjct: 542 TNKGTTRISRSSDFTAVSEMSKDTLTLGRNSLQSILMLDNLLTNKVVQSDNNVKGGTLPA 601

Query: 218 KIHTAAENASL 250
            +H   +N  L
Sbjct: 602 LVHYLVQNVHL 612


>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 812

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -3

Query: 368 FGQFLDKLFVLIQFFQSLSIHTWHIQGFSLVTML 267
           +G+F+ +LF LIQ  +   +  W +   + VT++
Sbjct: 385 YGEFVMRLFFLIQKLRKKYLSRWGVLDAAFVTVI 418


>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 809

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = +2

Query: 92  VNAVLQSSKDKKRNFLETV 148
           +NA+L+ SK+KK N +E++
Sbjct: 370 INALLERSKEKKANVIESL 388


>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1369

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = -1

Query: 202  GETLVLLWVIVLQTNLKLYSLQKVTFLVLRGLKN 101
            G  L  LW IV+ T   L     + F VLR L N
Sbjct: 1184 GSKLTKLWKIVVMTVSFLVGAWLIIFYVLRKLSN 1217


>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +2

Query: 71  RDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRF 199
           ++ L++ V      SK+  +    T+E Q+   N+D QK   F
Sbjct: 440 QNVLHDFVEGETSISKESLQQHKNTIENQLAAANWDCQKIDEF 482


>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
           Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -2

Query: 378 HQIFWPVS*QAFCSYSIFSKPQHPYMAHSRF 286
           HQ+F+P +  +  SY +   PQ  Y + S +
Sbjct: 415 HQVFYPPTSTSVSSYGLGKTPQPAYGSSSPY 445


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,596,451
Number of Sequences: 5004
Number of extensions: 28938
Number of successful extensions: 91
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)