Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_P11
         (418 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024200-4|AAF36008.1|  216|Caenorhabditis elegans Ribosomal pro...    76   1e-14
AJ270980-1|CAB65902.1|  186|Caenorhabditis elegans 60s ribosomal...    55   2e-08
AC024200-5|AAK66025.1|  155|Caenorhabditis elegans Ribosomal pro...    37   0.007
AL021346-2|CAB63233.1|  419|Caenorhabditis elegans Hypothetical ...    30   0.59 
Z70212-2|CAA94163.1|  430|Caenorhabditis elegans Hypothetical pr...    29   1.4  
AL021177-2|CAA15978.1|  192|Caenorhabditis elegans Hypothetical ...    28   3.1  
Z92813-2|CAB07284.1|  353|Caenorhabditis elegans Hypothetical pr...    27   4.1  
Z68213-5|CAA92434.1|  512|Caenorhabditis elegans Hypothetical pr...    27   5.5  
Z81109-1|CAB03245.1|  485|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z93382-12|CAB07620.2| 1238|Caenorhabditis elegans Hypothetical p...    26   9.5  
U40028-10|AAA81121.3|  363|Caenorhabditis elegans Serpentine rec...    26   9.5  
D83665-1|BAA20550.1| 1238|Caenorhabditis elegans copper transpor...    26   9.5  
AL032665-3|CAA21773.2| 1238|Caenorhabditis elegans Hypothetical ...    26   9.5  
AF016671-5|AAB66112.2| 1251|Caenorhabditis elegans Adaptin or ad...    26   9.5  
AF006635-1|AAB62695.1| 1116|Caenorhabditis elegans P-type ATPase...    26   9.5  

>AC024200-4|AAF36008.1|  216|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 1, isoform a protein.
          Length = 216

 Score = 75.8 bits (178), Expect = 1e-14
 Identities = 35/54 (64%), Positives = 42/54 (77%)
 Frame = +2

Query: 59  SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGHCKAK 220
           SKVSR++L E +  VL+ S +K R F ET+ELQIGLKNYDPQKDKRFSG  + K
Sbjct: 2   SKVSRESLNEAIAEVLKGSSEKPRKFRETIELQIGLKNYDPQKDKRFSGSIRLK 55



 Score = 55.2 bits (127), Expect = 2e-08
 Identities = 28/71 (39%), Positives = 35/71 (49%)
 Frame = +3

Query: 204 GTVKLKYIPRPKMQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXX 383
           G+++LK+IPRP M+VCV GDQ H DEA   ++P M                         
Sbjct: 50  GSIRLKHIPRPNMKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDAF 109

Query: 384 XXSXSLIKQIP 416
             S SLIKQIP
Sbjct: 110 IASESLIKQIP 120


>AJ270980-1|CAB65902.1|  186|Caenorhabditis elegans 60s ribosomal
           protein L10A protein.
          Length = 186

 Score = 55.2 bits (127), Expect = 2e-08
 Identities = 28/71 (39%), Positives = 35/71 (49%)
 Frame = +3

Query: 204 GTVKLKYIPRPKMQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXX 383
           G+++LK+IPRP M+VCV GDQ H DEA   ++P M                         
Sbjct: 20  GSIRLKHIPRPNMKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDAF 79

Query: 384 XXSXSLIKQIP 416
             S SLIKQIP
Sbjct: 80  IASESLIKQIP 90



 Score = 35.1 bits (77), Expect = 0.021
 Identities = 14/18 (77%), Positives = 15/18 (83%)
 Frame = +2

Query: 167 KNYDPQKDKRFSGHCKAK 220
           KNYDPQKDKRFSG  + K
Sbjct: 8   KNYDPQKDKRFSGSIRLK 25


>AC024200-5|AAK66025.1|  155|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 1, isoform b protein.
          Length = 155

 Score = 36.7 bits (81), Expect = 0.007
 Identities = 21/59 (35%), Positives = 24/59 (40%)
 Frame = +3

Query: 240 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSXSLIKQIP 416
           M+VCV GDQ H DEA   ++P M                           S SLIKQIP
Sbjct: 1   MKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDAFIASESLIKQIP 59


>AL021346-2|CAB63233.1|  419|Caenorhabditis elegans Hypothetical
           protein H37A05.2 protein.
          Length = 419

 Score = 30.3 bits (65), Expect = 0.59
 Identities = 20/71 (28%), Positives = 32/71 (45%)
 Frame = -3

Query: 338 LIQFFQSLSIHTWHIQGFSLVTMLLVSKNANLHFRPRYVF*LYSARRNACPSVGHSSSDQ 159
           L  F   +S  TW I+    +T L+      LH R   ++ +    + ACP+V   S + 
Sbjct: 86  LYNFSTLVSSETWDIEKMKSMTSLV----KELHNREVDMYRIIMREKPACPTVNVLSLEA 141

Query: 158 FEALQSPKSYV 126
           F  L   K+Y+
Sbjct: 142 FTELSPLKAYI 152


>Z70212-2|CAA94163.1|  430|Caenorhabditis elegans Hypothetical
           protein R04D3.3 protein.
          Length = 430

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 20/63 (31%), Positives = 34/63 (53%)
 Frame = +2

Query: 8   YNLPSVVIGGSLTNKMSSKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQK 187
           Y++ S V G S+ + ++S   +D+L E ++ + +S K K    LET+  Q G K  D   
Sbjct: 183 YHIGSQVGGSSMEDVLTSD-EKDSLSEAISNLPKSPKSKTDRDLETL-AQSGSKTRDSHS 240

Query: 188 DKR 196
            +R
Sbjct: 241 RRR 243


>AL021177-2|CAA15978.1|  192|Caenorhabditis elegans Hypothetical
           protein Y1A5A.1 protein.
          Length = 192

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +2

Query: 167 KNYDPQKDKRFSGHCKAKIHTAAENASLRSWRP 265
           K  D   D+R  GHC   I + A  A  R W P
Sbjct: 56  KRMDRSIDRRLCGHCHQSIGSEALVAMNRLWHP 88


>Z92813-2|CAB07284.1|  353|Caenorhabditis elegans Hypothetical
           protein T28A8.2 protein.
          Length = 353

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
 Frame = -1

Query: 247 TCIFGRGMYF---SFTVPGETLVLLWVIVLQTNLKLYSLQKVTFLVLRGLKNGIHALVER 77
           TC+  R   F    F V  E  +   +  ++TN+ L   QKV+F++     N + +L++ 
Sbjct: 188 TCVHIRRSDFFDVGFHVGSEKSIREVIGYIKTNVTLLQDQKVSFVIFGDDINFMRSLIQN 247

Query: 76  VTRHFRRHFVCQ 41
              +FR    C+
Sbjct: 248 QVPNFRFFLFCK 259


>Z68213-5|CAA92434.1|  512|Caenorhabditis elegans Hypothetical
           protein C01F6.1 protein.
          Length = 512

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +2

Query: 131 NFLETVELQIGLKNYDPQKDKRFSGHC 211
           N+     +Q+ + NY P  D +  GHC
Sbjct: 193 NYFNESSIQLHVYNYTPNHDDQLVGHC 219


>Z81109-1|CAB03245.1|  485|Caenorhabditis elegans Hypothetical
           protein R10D12.1 protein.
          Length = 485

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 191 KRFSGHCKAKIHTAAENASLRSWRPAAL 274
           K F+GH   K+H  +E   LR +   AL
Sbjct: 324 KMFAGHSSDKVHGISETTKLRIYNTIAL 351


>Z93382-12|CAB07620.2| 1238|Caenorhabditis elegans Hypothetical
           protein Y76A2A.2 protein.
          Length = 1238

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -2

Query: 249 KLAFSAAVCILALQCP 202
           K+AF AA+ +LA+ CP
Sbjct: 728 KIAFEAAITVLAIACP 743


>U40028-10|AAA81121.3|  363|Caenorhabditis elegans Serpentine
           receptor, class e (epsilon)protein 40 protein.
          Length = 363

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -2

Query: 315 QHPYMAHSRF*PRHNAAGLQERKLAFSAAVCILALQC 205
           Q  Y   +RF  R NA GL+  +LA       L  +C
Sbjct: 236 QSKYTLQARFQARENARGLEFTRLAVIVITMALLFEC 272


>D83665-1|BAA20550.1| 1238|Caenorhabditis elegans copper
           transporting ATPase protein.
          Length = 1238

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -2

Query: 249 KLAFSAAVCILALQCP 202
           K+AF AA+ +LA+ CP
Sbjct: 728 KIAFEAAITVLAIACP 743


>AL032665-3|CAA21773.2| 1238|Caenorhabditis elegans Hypothetical
           protein Y76A2A.2 protein.
          Length = 1238

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -2

Query: 249 KLAFSAAVCILALQCP 202
           K+AF AA+ +LA+ CP
Sbjct: 728 KIAFEAAITVLAIACP 743


>AF016671-5|AAB66112.2| 1251|Caenorhabditis elegans Adaptin or
           adaptin-related proteinprotein 5, isoform a protein.
          Length = 1251

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 41  LTNKMSSKVSRDTLYECVNAVL 106
           LTN ++S  +   LYEC+N V+
Sbjct: 263 LTNLINSTSAMSLLYECINTVI 284


>AF006635-1|AAB62695.1| 1116|Caenorhabditis elegans P-type ATPase
           protein.
          Length = 1116

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -2

Query: 249 KLAFSAAVCILALQCP 202
           K+AF AA+ +LA+ CP
Sbjct: 606 KIAFEAAITVLAIACP 621


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,020,167
Number of Sequences: 27780
Number of extensions: 168398
Number of successful extensions: 434
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)