Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_P05
         (342 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac...   120   6e-29
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch...   120   6e-29
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    28   0.46 
SPBC36B7.06c |mug20||sequence orphan|Schizosaccharomyces pombe|c...    26   1.8  
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa...    25   4.3  
SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase |Schi...    24   7.5  
SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex ...    23   9.8  

>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score =  120 bits (289), Expect = 6e-29
 Identities = 58/107 (54%), Positives = 76/107 (71%)
 Frame = +2

Query: 14  LSSKMADQTERSFQKQPTVFLNRKKGIGVKRSRKPLRYHKECGPRXSRLPXEAIEGTYID 193
           +++++  Q+ER+FQKQP +F N KKG G        R++K+ G    + P EAI G Y+D
Sbjct: 1   MATELVVQSERAFQKQPHIFQNAKKGAG-------RRWYKDVG-LGFKTPAEAIYGEYVD 52

Query: 194 KKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNXFEK 334
           KKCPF G VSIRGRILTG V   KM RTI+IRR+YLH++PKYN +EK
Sbjct: 53  KKCPFVGQVSIRGRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEK 99


>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score =  120 bits (289), Expect = 6e-29
 Identities = 58/107 (54%), Positives = 76/107 (71%)
 Frame = +2

Query: 14  LSSKMADQTERSFQKQPTVFLNRKKGIGVKRSRKPLRYHKECGPRXSRLPXEAIEGTYID 193
           +++++  Q+ER+FQKQP +F N KKG G        R++K+ G    + P EAI G Y+D
Sbjct: 1   MATELVVQSERAFQKQPHIFQNAKKGAG-------RRWYKDVG-LGFKTPAEAIYGEYVD 52

Query: 194 KKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNXFEK 334
           KKCPF G VSIRGRILTG V   KM RTI+IRR+YLH++PKYN +EK
Sbjct: 53  KKCPFVGQVSIRGRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEK 99


>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 515

 Score = 27.9 bits (59), Expect = 0.46
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = -3

Query: 289 PDHDSSLHL--HFLNDAGEDAAADRNVTSEGTLLVNVGT 179
           P+H   +H+  H L D  + +  DRN  +EGT   N  T
Sbjct: 127 PNHKLEIHVYKHILPDLPQSSEVDRNSETEGTREENSNT 165


>SPBC36B7.06c |mug20||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 169

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 304 VKVIAPDHDSSLHLHFLNDAGEDAAADRNVTSEGTL 197
           V   +  HDS+LH +FLN   +D   +   T+E  L
Sbjct: 24  VLAFSEHHDSALHSYFLNARVKDVILESLRTTEEKL 59


>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 889

 Score = 24.6 bits (51), Expect = 4.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 99  TPIPFLRFRKTVGCFWNER 43
           T   F++ R TV CFW E+
Sbjct: 290 TVFSFVQVRGTVPCFWEEQ 308


>SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 506

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -3

Query: 289 PDHDSSLHLHFLNDAGEDAAADRNVTSEGTLLVNVGTLNRL 167
           P     L L  L   G D    RNVT +GT+++     NR+
Sbjct: 445 PSIPKILELDHLTITG-DVNIGRNVTLKGTVIIVASDANRI 484


>SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 13/72 (18%), Positives = 29/72 (40%)
 Frame = +2

Query: 95  GVKRSRKPLRYHKECGPRXSRLPXEAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQR 274
           G++ SR  +RY K    +      + +E  ++    P T    I   I       + + +
Sbjct: 227 GIQISRTTIRYFKHNNMKDLERILQELEDDFVKHNRPLTRRFIITEGISENYGDMVDLTK 286

Query: 275 TIVIRRDYLHYL 310
            + +++ Y + L
Sbjct: 287 IVALKKKYKYRL 298


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,314,749
Number of Sequences: 5004
Number of extensions: 22359
Number of successful extensions: 58
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)