Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP08_F_P05
(342 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0920 - 22603868-22603964,22604110-22604222,22604281-226044... 115 1e-26
07_03_0919 - 22594980-22595111,22595398-22595427,22595522-225955... 115 1e-26
04_04_1135 + 31140032-31140043,31140552-31140592,31140680-311407... 115 1e-26
04_04_1134 + 31137326-31137337,31137964-31138004,31138089-311381... 115 1e-26
04_04_0417 - 25052305-25052398,25052583-25052672,25052740-250529... 111 1e-25
08_01_0706 - 6235817-6235988,6236028-6236338,6236421-6236627,623... 99 1e-21
03_05_0248 + 22348504-22348568,22349064-22349371,22349476-223500... 29 1.3
08_02_0383 - 16539472-16539633,16543044-16543205 27 5.1
06_03_0924 - 25976629-25976979,25977471-25978424,25978512-259785... 26 6.7
02_04_0363 + 22369461-22370127,22370240-22370310,22370412-223709... 26 6.7
01_06_1355 + 36610390-36610479,36611906-36612063,36612144-366125... 26 6.7
06_03_0037 + 15773444-15773647,15773862-15774367,15775011-157752... 26 8.9
02_05_0847 + 32183249-32183486,32184001-32184118,32184231-321843... 26 8.9
>07_03_0920 -
22603868-22603964,22604110-22604222,22604281-22604429,
22604732-22604832,22604917-22604957,22605584-22605595
Length = 170
Score = 115 bits (276), Expect = 1e-26
Identities = 57/99 (57%), Positives = 70/99 (70%), Gaps = 1/99 (1%)
Frame = +2
Query: 26 MADQTERSFQKQPTVFLNRKK-GIGVKRSRKPLRYHKECGPRXSRLPXEAIEGTYIDKKC 202
MA+QTE++F KQP VFL+ KK G G K + R+ K G + P EAIEGTYIDKKC
Sbjct: 1 MAEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIG-LGFKTPREAIEGTYIDKKC 59
Query: 203 PFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKY 319
PFTG VSIRGRI+ G KM RTI++RR+YLH++ KY
Sbjct: 60 PFTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKY 98
>07_03_0919 -
22594980-22595111,22595398-22595427,22595522-22595587,
22596021-22596107,22596868-22596921,22597696-22597762,
22598099-22598215,22598536-22598637,22598784-22598902,
22598966-22599049,22599220-22599354,22599470-22599505,
22599581-22599700,22600557-22600645,22601507-22601596,
22601629-22601802,22602135-22602235,22602323-22602363,
22602872-22602883
Length = 551
Score = 115 bits (276), Expect = 1e-26
Identities = 57/99 (57%), Positives = 70/99 (70%), Gaps = 1/99 (1%)
Frame = +2
Query: 26 MADQTERSFQKQPTVFLNRKK-GIGVKRSRKPLRYHKECGPRXSRLPXEAIEGTYIDKKC 202
MA+QTE++F KQP VFL+ KK G G K + R+ K G + P EAIEGTYIDKKC
Sbjct: 1 MAEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIG-LGFKTPREAIEGTYIDKKC 59
Query: 203 PFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKY 319
PFTG VSIRGRI+ G KM RTI++RR+YLH++ KY
Sbjct: 60 PFTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKY 98
>04_04_1135 +
31140032-31140043,31140552-31140592,31140680-31140780,
31141113-31141419,31141565-31141661
Length = 185
Score = 115 bits (276), Expect = 1e-26
Identities = 57/99 (57%), Positives = 70/99 (70%), Gaps = 1/99 (1%)
Frame = +2
Query: 26 MADQTERSFQKQPTVFLNRKK-GIGVKRSRKPLRYHKECGPRXSRLPXEAIEGTYIDKKC 202
MA+QTE++F KQP VFL+ KK G G K + R+ K G + P EAIEGTYIDKKC
Sbjct: 1 MAEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIG-LGFKTPREAIEGTYIDKKC 59
Query: 203 PFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKY 319
PFTG VSIRGRI+ G KM RTI++RR+YLH++ KY
Sbjct: 60 PFTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKY 98
>04_04_1134 +
31137326-31137337,31137964-31138004,31138089-31138189,
31138489-31138637,31138696-31138808,31138954-31139050
Length = 170
Score = 115 bits (276), Expect = 1e-26
Identities = 57/99 (57%), Positives = 70/99 (70%), Gaps = 1/99 (1%)
Frame = +2
Query: 26 MADQTERSFQKQPTVFLNRKK-GIGVKRSRKPLRYHKECGPRXSRLPXEAIEGTYIDKKC 202
MA+QTE++F KQP VFL+ KK G G K + R+ K G + P EAIEGTYIDKKC
Sbjct: 1 MAEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIG-LGFKTPREAIEGTYIDKKC 59
Query: 203 PFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKY 319
PFTG VSIRGRI+ G KM RTI++RR+YLH++ KY
Sbjct: 60 PFTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKY 98
>04_04_0417 -
25052305-25052398,25052583-25052672,25052740-25052905,
25053547-25053647,25053735-25053775,25054170-25054181
Length = 167
Score = 111 bits (268), Expect = 1e-25
Identities = 57/99 (57%), Positives = 68/99 (68%), Gaps = 1/99 (1%)
Frame = +2
Query: 26 MADQTERSFQKQPTVFLNRKKGI-GVKRSRKPLRYHKECGPRXSRLPXEAIEGTYIDKKC 202
MA+QTER+F KQP VFL KK G K + R+ K G + P EAIEGTYIDKKC
Sbjct: 1 MAEQTERAFLKQPKVFLCPKKTTKGKKPGKGGNRFWKNIG-LGFKTPREAIEGTYIDKKC 59
Query: 203 PFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKY 319
PFTG VSIRGRI+ G KM RTI++RR+YLH++ KY
Sbjct: 60 PFTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKY 98
>08_01_0706 -
6235817-6235988,6236028-6236338,6236421-6236627,
6236718-6236889,6236994-6237249,6238015-6238073,
6238693-6238782,6238869-6239013,6239598-6239712,
6240690-6240701
Length = 512
Score = 98.7 bits (235), Expect = 1e-21
Identities = 47/88 (53%), Positives = 58/88 (65%)
Frame = +2
Query: 71 FLNRKKGIGVKRSRKPLRYHKECGPRXSRLPXEAIEGTYIDKKCPFTGNVSIRGRILTGV 250
F +K G G K + R+ K G + P EAIEGTYIDKKCPFTG VSIRGRI+ G
Sbjct: 8 FSPKKSGKGKKPGKGGNRFWKNIG-LGFKTPREAIEGTYIDKKCPFTGTVSIRGRIIAGT 66
Query: 251 VQKMKMQRTIVIRRDYLHYLPKYNXFEK 334
KM RTI++RR+YLH++ KY +EK
Sbjct: 67 CHSAKMNRTIIVRRNYLHFVKKYQRYEK 94
>03_05_0248 +
22348504-22348568,22349064-22349371,22349476-22350039,
22350082-22350128,22351244-22351715,22352349-22352611
Length = 572
Score = 28.7 bits (61), Expect = 1.3
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +2
Query: 173 IEGTYIDKKCPFTGNVSIRGRILTGVVQKM-KMQRTIVIRRDYLHYLPKY 319
+ GT PFTG++S G + + KM + +V +DYLH K+
Sbjct: 461 VRGTEDAPITPFTGDMSQSGDAIVAALMKMLAINPHLVTDKDYLHTAMKH 510
>08_02_0383 - 16539472-16539633,16543044-16543205
Length = 107
Score = 26.6 bits (56), Expect = 5.1
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 239 LTGVVQKMKMQRTIVIRRDYLHYLPKYNXFEK 334
+ G+V KMQ+++V+ D L + YN + K
Sbjct: 4 VVGIVVSNKMQKSVVVAVDRLFHHKMYNRYVK 35
>06_03_0924 -
25976629-25976979,25977471-25978424,25978512-25978565,
25979135-25979254,25979357-25979532,25979624-25980107,
25980541-25980744,25981671-25981877,25982179-25982271,
25982433-25982621,25983364-25983423,25983591-25983927,
25984195-25984432,25984614-25984816,25985549-25986554,
25987125-25987290,25987715-25987824,25987944-25988195,
25988360-25988402,25988488-25988550,25989512-25989624,
25990787-25990838
Length = 1824
Score = 26.2 bits (55), Expect = 6.7
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 34 SDGTLIPKTTYSLSEPQERYWCEAEQK 114
+D + K + SLSEP+E + EA QK
Sbjct: 186 NDNLAVEKMSSSLSEPEESFESEAFQK 212
>02_04_0363 +
22369461-22370127,22370240-22370310,22370412-22370978,
22371056-22371301
Length = 516
Score = 26.2 bits (55), Expect = 6.7
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -1
Query: 204 GHFLSM*VPSIASXGSLEXRGPHSLWY 124
GH+ +PSI G + R HS WY
Sbjct: 211 GHYSQPKLPSIQGMGDWKRRQMHSHWY 237
>01_06_1355 +
36610390-36610479,36611906-36612063,36612144-36612523,
36612600-36613583,36614228-36614292,36614946-36615024,
36615480-36615529,36616595-36616781,36617922-36617957,
36619226-36619348,36619466-36620386,36620506-36620636
Length = 1067
Score = 26.2 bits (55), Expect = 6.7
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +1
Query: 4 FFSFVKQNGGSDGTLIPKTTYSLSEPQERYWCEAEQKTVEIPQGMWA 144
FF + G +DG ++L PQER TV +P G WA
Sbjct: 489 FFVVAQGFGNNDGEAAGAGEFNLVNPQER-------NTVAVPTGGWA 528
>06_03_0037 +
15773444-15773647,15773862-15774367,15775011-15775246,
15775483-15775685,15775989-15776279,15776997-15777084,
15777539-15777861
Length = 616
Score = 25.8 bits (54), Expect = 8.9
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = -2
Query: 203 DTSCQCRYPQSPXRGVLKXEAHIPC 129
DT QCR PQS GVL + H C
Sbjct: 201 DTMQQCRVPQSSVMGVLS-DMHGDC 224
>02_05_0847 +
32183249-32183486,32184001-32184118,32184231-32184376,
32184591-32186080
Length = 663
Score = 25.8 bits (54), Expect = 8.9
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 98 VKRSRKPLRYHKECGPRXSRLPXEAIE 178
V++ RK YHK+CGP R +AIE
Sbjct: 228 VQKLRKYEAYHKKCGPGTKRY-RKAIE 253
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,508,253
Number of Sequences: 37544
Number of extensions: 149700
Number of successful extensions: 365
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 359
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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