Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_P05
         (342 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73426-1|CAA97792.1|  155|Caenorhabditis elegans Hypothetical pr...   125   1e-29
Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical pr...    36   0.010
U29612-1|AAA68801.1|  387|Caenorhabditis elegans Hypothetical pr...    30   0.50 
AC006633-6|AAK68378.4|  578|Caenorhabditis elegans Hypothetical ...    27   4.7  

>Z73426-1|CAA97792.1|  155|Caenorhabditis elegans Hypothetical
           protein F40F11.1 protein.
          Length = 155

 Score =  125 bits (301), Expect = 1e-29
 Identities = 63/103 (61%), Positives = 76/103 (73%)
 Frame = +2

Query: 26  MADQTERSFQKQPTVFLNRKKGIGVKRSRKPLRYHKECGPRXSRLPXEAIEGTYIDKKCP 205
           M++QTER+F KQPTV LN K  I +  S+K  RY +E G    + P +A+EGTYIDKKCP
Sbjct: 1   MSEQTERAFLKQPTVNLNNKARI-LAGSKKTPRYIREVG-LGFKAPRDAVEGTYIDKKCP 58

Query: 206 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNXFEK 334
           + GNV IRG ILTGVV K KM RTIV+RRDYLHY+ KY  +EK
Sbjct: 59  WAGNVPIRGMILTGVVLKNKMTRTIVVRRDYLHYIKKYRRYEK 101


>Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical protein
            F32H2.5 protein.
          Length = 2586

 Score = 35.5 bits (78), Expect = 0.010
 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
 Frame = +2

Query: 155  RLPXEAIEGTYIDKKC----PFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPK 316
            RLP +AI G + D++C     F+G +   G  L G++    +  T+++ RDY   +P+
Sbjct: 1645 RLPPDAIPGNFADRECLLGMEFSGRLK-DGTRLMGILPAQALATTVMVDRDYAWEVPR 1701


>U29612-1|AAA68801.1|  387|Caenorhabditis elegans Hypothetical
           protein C09B8.3 protein.
          Length = 387

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = +2

Query: 8   FHLSSKMADQTERSFQKQPTVFLNRKKGIGVKRSRKPLRYHKEC 139
           F++  K  +  + ++Q +  + +NR+  I  + S +P+  H EC
Sbjct: 276 FNVIQKHENNGDENYQLERGICMNRRPSIDSENSHQPMSEHSEC 319


>AC006633-6|AAK68378.4|  578|Caenorhabditis elegans Hypothetical
           protein F35B3.7 protein.
          Length = 578

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +1

Query: 55  KTTYSLSEPQERYW-CEAEQKTVEIP 129
           KT  S+  PQ R++ CE  QKTV++P
Sbjct: 109 KTHKSIVLPQPRFYTCERIQKTVKLP 134


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,370,279
Number of Sequences: 27780
Number of extensions: 129944
Number of successful extensions: 287
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 286
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 440341558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)