Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_P03
         (458 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024776-21|AAK68479.1|   65|Caenorhabditis elegans Ribosomal pr...    81   5e-16
Z81129-4|CAB03405.1|  330|Caenorhabditis elegans Hypothetical pr...    31   0.53 
AF040645-9|AAB94972.2|  197|Caenorhabditis elegans Hypothetical ...    30   0.93 
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p...    28   3.8  
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p...    28   3.8  
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p...    28   3.8  
U28929-1|AAN63410.1|  418|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>AC024776-21|AAK68479.1|   65|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 28 protein.
          Length = 65

 Score = 80.6 bits (190), Expect = 5e-16
 Identities = 41/54 (75%), Positives = 46/54 (85%), Gaps = 1/54 (1%)
 Frame = +1

Query: 70  MDKPNVLARVVKVLGRTGSQGQCTQVKVEFIG-ETSRQIIRNVKGPVRDGDILT 228
           MDK   LARV KV+GRTGSQGQCTQV+VEFI  + +R IIRNVKGPVR+GDILT
Sbjct: 1   MDKLT-LARVTKVIGRTGSQGQCTQVRVEFINDQNNRSIIRNVKGPVREGDILT 53


>Z81129-4|CAB03405.1|  330|Caenorhabditis elegans Hypothetical
           protein T23F1.6 protein.
          Length = 330

 Score = 30.7 bits (66), Expect = 0.53
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 9   ETRQLWCTCAYCIKLDITSQNG*TQRSCSCRES 107
           ETRQ  C CA  ++   + Q    Q SCSC+ S
Sbjct: 22  ETRQASCGCAQSVQPTCSCQQASQQYSCSCQPS 54


>AF040645-9|AAB94972.2|  197|Caenorhabditis elegans Hypothetical
           protein F52C6.3 protein.
          Length = 197

 Score = 29.9 bits (64), Expect = 0.93
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +2

Query: 170 PAVRSSET*KDPSVTETSSLFLNLNVKLGGCDRLLQHYCIRL 295
           P   S E  +DP   E+S +  NLNVK+    + L H  IR+
Sbjct: 64  PLRESEEVTEDPISVESSEVIGNLNVKVAETQQELHHEGIRI 105


>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
            protein K07E12.1b protein.
          Length = 12268

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -2

Query: 142  EYTGPENQYGQALSRHEQERWVYP 71
            E TGPE+Q    LS++E+  WVYP
Sbjct: 8246 EPTGPEDQ---KLSKNEKGEWVYP 8266



 Score = 27.9 bits (59), Expect = 3.8
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -2

Query: 142  EYTGPENQYGQALSRHEQERWVYP 71
            E TGPE+Q    LS++E+  WVYP
Sbjct: 9290 EPTGPEDQ---KLSKNEKGEWVYP 9310


>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
            protein K07E12.1a protein.
          Length = 13100

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -2

Query: 142  EYTGPENQYGQALSRHEQERWVYP 71
            E TGPE+Q    LS++E+  WVYP
Sbjct: 8291 EPTGPEDQ---KLSKNEKGEWVYP 8311



 Score = 27.9 bits (59), Expect = 3.8
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -2

Query: 142  EYTGPENQYGQALSRHEQERWVYP 71
            E TGPE+Q    LS++E+  WVYP
Sbjct: 9335 EPTGPEDQ---KLSKNEKGEWVYP 9355


>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
            protein.
          Length = 13100

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -2

Query: 142  EYTGPENQYGQALSRHEQERWVYP 71
            E TGPE+Q    LS++E+  WVYP
Sbjct: 8291 EPTGPEDQ---KLSKNEKGEWVYP 8311



 Score = 27.9 bits (59), Expect = 3.8
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -2

Query: 142  EYTGPENQYGQALSRHEQERWVYP 71
            E TGPE+Q    LS++E+  WVYP
Sbjct: 9335 EPTGPEDQ---KLSKNEKGEWVYP 9355


>U28929-1|AAN63410.1|  418|Caenorhabditis elegans Hypothetical
           protein F09C12.2 protein.
          Length = 418

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +1

Query: 142 QVKVEFIGETSRQIIRNVKGP-VRD 213
           Q+ +E++G    Q+IR +K P +RD
Sbjct: 267 QLLIEYLGTPDEQVIRRIKSPSIRD 291


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,950,099
Number of Sequences: 27780
Number of extensions: 161950
Number of successful extensions: 396
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)