Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP08_F_P02
(513 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC947.08c |||histone promoter control protein Hpc2 |Schizosacc... 27 1.6
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 27 2.2
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr... 26 3.8
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 26 3.8
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 26 3.8
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 26 3.8
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 26 3.8
SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|c... 25 5.0
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz... 25 6.7
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch... 25 8.8
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 8.8
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos... 25 8.8
SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4 |S... 25 8.8
>SPBC947.08c |||histone promoter control protein Hpc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 338
Score = 27.1 bits (57), Expect = 1.6
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -1
Query: 429 PEADPRHSDTTVWWGETPPATFTSVSSPEL 340
P ++P+HS TV +PP+ T+ S+ EL
Sbjct: 257 PLSEPKHSPATVNEHISPPSALTNPSTEEL 286
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 26.6 bits (56), Expect = 2.2
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = -1
Query: 432 VPEADPRHSDTTVWWGETPPATFTSVSSPELFNSIFRLYGSGAK 301
+PE SD+ + P+ +++V P +SIF+ Y G K
Sbjct: 494 IPEISLNISDSKIPTSAYMPSYYSAVIFPSSISSIFQKYNYGGK 537
>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 703
Score = 25.8 bits (54), Expect = 3.8
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -2
Query: 419 IRVIQIPLYGGVKLRLQLLPVYLPPSCSIPFSGCT 315
I + +P + V+LR + ++ PP+ I F CT
Sbjct: 350 ISALPLPCFLSVQLRWFITYIFHPPAAMILFISCT 384
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.8 bits (54), Expect = 3.8
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -1
Query: 414 RHSDTTVWWGETPPATFTSVSSPEL 340
RH T WW T P S+S+ +L
Sbjct: 303 RHKFTVAWWAMTFPLGTMSISNTQL 327
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.8 bits (54), Expect = 3.8
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -1
Query: 414 RHSDTTVWWGETPPATFTSVSSPEL 340
RH T WW T P S+S+ +L
Sbjct: 303 RHKFTVAWWAMTFPLGTMSISNTQL 327
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.8 bits (54), Expect = 3.8
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -1
Query: 414 RHSDTTVWWGETPPATFTSVSSPEL 340
RH T WW T P S+S+ +L
Sbjct: 303 RHKFTVAWWAMTFPLGTMSISNTQL 327
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.8 bits (54), Expect = 3.8
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -1
Query: 414 RHSDTTVWWGETPPATFTSVSSPEL 340
RH T WW T P S+S+ +L
Sbjct: 303 RHKFTVAWWAMTFPLGTMSISNTQL 327
>SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 374
Score = 25.4 bits (53), Expect = 5.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 134 CYIWLVFIFYYY*KTNGRIITRIYGSTRTI*RNQ 33
C+ VF F K N +I +R YGS ++ R Q
Sbjct: 58 CFFLYVFSFITQKKKNQKIASRWYGSLQSSFRQQ 91
>SPAC3A11.05c |kms1||meiotic spindle pole body protein
Kms1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 25.0 bits (52), Expect = 6.7
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -1
Query: 120 SVHFLLLLEDEWKNHNKNLWKHADDLTQ 37
++ L L E KN N L H DDLT+
Sbjct: 326 TIRRLALENHELKNSNNQLNNHIDDLTR 353
>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 679
Score = 24.6 bits (51), Expect = 8.8
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +2
Query: 281 TPDVELRFAPEPYSRKMELNSSGEDTLVKVAGGVSPHHTVVS 406
+PD R EP+ R ++ N++ +V+ G V P TV S
Sbjct: 596 SPDGTNRIVIEPFERSVDPNNADIVEMVERNGIVVPKVTVTS 637
>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 689
Score = 24.6 bits (51), Expect = 8.8
Identities = 8/31 (25%), Positives = 19/31 (61%)
Frame = -3
Query: 406 RYHCMVG*NSACNFYQCIFPRAVQFHFPAVR 314
R +C+ G N A ++ + P ++ +HF +++
Sbjct: 104 RSNCLTGINEAEYIWKSLIPESIFYHFVSLQ 134
>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 601
Score = 24.6 bits (51), Expect = 8.8
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -1
Query: 102 LLEDEWKNHNKNLWKHADDLTQPTALYRV 16
L+ K NKNL H +D T+P Y V
Sbjct: 217 LVSARLKKRNKNLSVHFEDGTKPGDAYEV 245
>SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 24.6 bits (51), Expect = 8.8
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 230 YVTSHRIHAPKYRKHRATPDVELRF 304
+V + R KY+KHR D++ RF
Sbjct: 122 FVIADRYDNEKYKKHRTLEDLKDRF 146
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,189,372
Number of Sequences: 5004
Number of extensions: 45198
Number of successful extensions: 120
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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