Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_P02
         (513 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0573 + 18872720-18872781,18873261-18873610,18873917-188743...    30   0.95 
11_02_0150 - 8816714-8817806,8817993-8818126                           29   1.7  
02_01_0627 + 4708648-4708836,4708975-4709064,4709579-4709664,471...    29   2.2  
04_04_1192 + 31611804-31612113,31612235-31614058,31614098-316148...    28   5.1  
06_03_0908 - 25858909-25859185,25859765-25859892,25860061-258607...    27   6.7  
08_01_0378 + 3360215-3360253,3360326-3360437,3362176-3362213,336...    27   8.8  
06_01_0329 + 2383305-2384057,2385423-2385469,2386383-2386815,238...    27   8.8  
02_02_0349 + 9237537-9238334                                           27   8.8  

>10_08_0573 +
           18872720-18872781,18873261-18873610,18873917-18874334,
           18875172-18877180,18877390-18877398,18880291-18880398,
           18880399-18880469,18880769-18881785
          Length = 1347

 Score = 30.3 bits (65), Expect = 0.95
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -1

Query: 180 ILANWHKII*IFELRMLYLASVHFLLLLEDEWKNHNKNLWKHADDLTQPTAL 25
           +++N H +    E    +LAS  FL  +E  WK +NK   +  + L  P+ +
Sbjct: 624 LISNLHVVKDAQEAAQAHLASKQFLQKMELSWKGNNKQAEQILEQLKPPSGI 675


>11_02_0150 - 8816714-8817806,8817993-8818126
          Length = 408

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 126 LASVHFLLLLEDEWKNHNKNLWK 58
           L S  FLL+L+D WK   +++WK
Sbjct: 298 LKSKRFLLILDDMWKCDGEDMWK 320


>02_01_0627 +
           4708648-4708836,4708975-4709064,4709579-4709664,
           4710108-4710332,4711251-4711314,4711793-4712491,
           4712657-4712764,4712920-4713051,4713183-4713359,
           4713920-4713973,4714072-4714134,4714227-4714928,
           4715048-4715175,4715563-4715839
          Length = 997

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +2

Query: 197 VLFTLILIVDDYVTSHRIHAPKYRKHRATPDV 292
           VL +++ ++D+Y    ++  PK+ KH   PD+
Sbjct: 551 VLTSVLTLIDEYDLYGQVAYPKHHKHSEVPDI 582


>04_04_1192 +
           31611804-31612113,31612235-31614058,31614098-31614842,
           31615047-31616835,31617136-31617163,31617343-31617794
          Length = 1715

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -1

Query: 144 ELRMLYLASVHFLLLLEDEWKNHNKNLW 61
           E+ M  + +  FLL+L+D W++ +KN W
Sbjct: 333 EMLMGSVRNRRFLLILDDVWEDKDKNGW 360


>06_03_0908 -
           25858909-25859185,25859765-25859892,25860061-25860765,
           25860882-25860944,25861031-25861084,25861338-25861514,
           25861644-25861813,25862011-25862065,25862220-25862918,
           25863110-25863173,25863515-25863723,25866138-25866227,
           25866390-25866617
          Length = 972

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +2

Query: 197 VLFTLILIVDDYVTSHRIHAPKYRKHRATPDV 292
           VL +++ ++D+Y    ++  PK  KH   PD+
Sbjct: 525 VLTSVLTLIDEYDLYGQVAYPKRHKHSEVPDI 556


>08_01_0378 +
           3360215-3360253,3360326-3360437,3362176-3362213,
           3363949-3363966,3364629-3364847,3364937-3366727,
           3367764-3367827,3367915-3367975,3368685-3368694
          Length = 783

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 18/53 (33%), Positives = 31/53 (58%)
 Frame = +2

Query: 329 MELNSSGEDTLVKVAGGVSPHHTVVSE*RGSASGTE*HRXMETLMVSGKPSKR 487
           ME+NSSGE+ +VKV     P+   +++ R   +  E +R +E L + G+  +R
Sbjct: 1   MEINSSGEEAVVKVR---KPY--TITKQRERWTEAEHNRFLEALKLYGRAWQR 48


>06_01_0329 +
           2383305-2384057,2385423-2385469,2386383-2386815,
           2386852-2387034,2388388-2389044
          Length = 690

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
 Frame = +2

Query: 284 PDVELRFAPEPY-----SRKMELNSSGEDTLVKVAGGVSPHHTV 400
           P++E+   P P      +R    N  G+D +  VA GVS HH V
Sbjct: 149 PELEVEQLPAPVLAVQVTRPAFRNDDGDDAVGVVAVGVSVHHAV 192


>02_02_0349 + 9237537-9238334
          Length = 265

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 126 LASVHFLLLLEDEWKNHNKNLWK 58
           L S  FLL+L+D WK  +++ WK
Sbjct: 143 LKSKRFLLVLDDIWKCSSEDEWK 165


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,750,604
Number of Sequences: 37544
Number of extensions: 318340
Number of successful extensions: 782
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)