Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_P02
         (513 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93397-6|CAB07718.2|  550|Caenorhabditis elegans Hypothetical pr...    27   6.0  
U41746-9|AAA83334.3|  559|Caenorhabditis elegans Groundhog (hedg...    27   7.9  
AL032657-2|CAA21738.1|  368|Caenorhabditis elegans Hypothetical ...    27   7.9  

>Z93397-6|CAB07718.2|  550|Caenorhabditis elegans Hypothetical
           protein ZC482.4 protein.
          Length = 550

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -1

Query: 369 TFTSVSSPELFNSIFRLYGSGAKRNSTSGVA 277
           T  +VSSPE + +   LYG G + NSTS ++
Sbjct: 185 TIRNVSSPEHYETCNTLYG-GLQLNSTSNIS 214


>U41746-9|AAA83334.3|  559|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 6 protein.
          Length = 559

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 235 HLSQDSRPKVQKTSRYPRCRITLRPGTVQP 324
           ++ Q  RP+ Q+ S+YP  R  LRP  V+P
Sbjct: 85  YIQQQYRPQQQQYSQYP--RFDLRPQPVRP 112


>AL032657-2|CAA21738.1|  368|Caenorhabditis elegans Hypothetical
           protein Y47H9C.2 protein.
          Length = 368

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +2

Query: 164 CQFAKMAVIRFVLFTLILIVDDYVTSHRIHAPKYRKHRATP 286
           C F   ++I    F   L+  D  T+  +     RKHR TP
Sbjct: 257 CFFTTWSIIGLACFHTYLLCADLTTNEDLKGLYRRKHRPTP 297


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,248,951
Number of Sequences: 27780
Number of extensions: 262781
Number of successful extensions: 687
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)