Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_O18
         (308 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132876-13|CAD21665.1|  117|Caenorhabditis elegans Hypothetical...    76   6e-15
AF003136-7|ABE73336.1| 1539|Caenorhabditis elegans Hypothetical ...    28   1.5  
U40798-6|AAA81476.1| 1003|Caenorhabditis elegans Temporarily ass...    27   2.7  
AF038609-2|AAK29794.1|  226|Caenorhabditis elegans Hypothetical ...    27   2.7  
AF038609-1|AAO61425.1|  234|Caenorhabditis elegans Hypothetical ...    27   2.7  
AF038619-6|AAB92077.2|  442|Caenorhabditis elegans Hypothetical ...    26   4.7  
Z82277-2|CAB05250.1|  272|Caenorhabditis elegans Hypothetical pr...    26   6.2  
U53332-1|AAK31529.2|  580|Caenorhabditis elegans Hypothetical pr...    26   6.2  
DQ178637-1|ABD75716.1|  580|Caenorhabditis elegans F59G1.4 protein.    26   6.2  
Z66560-1|CAA91449.1|  214|Caenorhabditis elegans Hypothetical pr...    25   8.1  
U44902-1|AAA93318.1|  483|Caenorhabditis elegans serine/threonin...    25   8.1  
AF016685-1|AAG24144.2|  300|Caenorhabditis elegans Hypothetical ...    25   8.1  
AC024770-7|AAP13756.1|  411|Caenorhabditis elegans Checkpoint ki...    25   8.1  
AC024770-6|AAF59485.2|  503|Caenorhabditis elegans Checkpoint ki...    25   8.1  

>AL132876-13|CAD21665.1|  117|Caenorhabditis elegans Hypothetical
           protein Y105E8A.16 protein.
          Length = 117

 Score = 75.8 bits (178), Expect = 6e-15
 Identities = 34/47 (72%), Positives = 41/47 (87%)
 Frame = +1

Query: 166 HRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTXILRIT 306
           HRIR+TLTS+NV+ LEKVCA LI+GAK + L VKGP+RMPT +LRIT
Sbjct: 17  HRIRLTLTSQNVKPLEKVCAQLIDGAKNEHLIVKGPIRMPTKVLRIT 63


>AF003136-7|ABE73336.1| 1539|Caenorhabditis elegans Hypothetical
            protein F28B3.1 protein.
          Length = 1539

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +1

Query: 139  KPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKK 249
            + +A+ SP HRI   +TS+N       C+ L+  A++
Sbjct: 943  RSRAQSSPDHRILTLVTSKNAEQDTATCSTLLKRAER 979


>U40798-6|AAA81476.1| 1003|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 158 protein.
          Length = 1003

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -1

Query: 206 ERTL-REVRVILMR*IGETSAWGFSMSLPDTTA 111
           ERTL  E R ++MR + + S  G S+SLP   A
Sbjct: 838 ERTLLMEERTMMMRDLQKVSGGGMSLSLPPANA 870


>AF038609-2|AAK29794.1|  226|Caenorhabditis elegans Hypothetical
           protein C54E4.2a protein.
          Length = 226

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 103 MAAAVVSGKDIEKPQAEVSPIH 168
           ++AA +S +D+EKP +   P+H
Sbjct: 14  ISAAYISSEDLEKPSSADKPVH 35


>AF038609-1|AAO61425.1|  234|Caenorhabditis elegans Hypothetical
           protein C54E4.2b protein.
          Length = 234

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 103 MAAAVVSGKDIEKPQAEVSPIH 168
           ++AA +S +D+EKP +   P+H
Sbjct: 14  ISAAYISSEDLEKPSSADKPVH 35


>AF038619-6|AAB92077.2|  442|Caenorhabditis elegans Hypothetical
           protein F56A11.6 protein.
          Length = 442

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = +2

Query: 59  LIEKLFISAGIQQATWQPL*CQAKTSRNPRQRSPLFTASGSLLLLAMCAHSRRSV 223
           L+  LF+         +P    A+  R PR R  +F  S +LL+L M  H  R V
Sbjct: 165 LMLMLFLKMRADAPFAEPRKHPARDERRPRSRVTIFNFSANLLVLCM-DHLHRMV 218


>Z82277-2|CAB05250.1|  272|Caenorhabditis elegans Hypothetical
           protein LLC1.2 protein.
          Length = 272

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +2

Query: 137 RNPRQRSPLFTASGSLLLLAMCAHSRRSVL 226
           RNP Q + + T   SL    +C H  R  L
Sbjct: 68  RNPGQTADMLTVCNSLETFNLCMHGNRGCL 97


>U53332-1|AAK31529.2|  580|Caenorhabditis elegans Hypothetical
           protein F59G1.4 protein.
          Length = 580

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 81  RPEFNKQHGSRCSVRQRHRETPGRGLPYSPHQD 179
           RP  N+  G+R  +R+ ++ET G     S  +D
Sbjct: 349 RPSTNELSGARLLIRKAYKETAGSNFQISDIKD 381


>DQ178637-1|ABD75716.1|  580|Caenorhabditis elegans F59G1.4 protein.
          Length = 580

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 81  RPEFNKQHGSRCSVRQRHRETPGRGLPYSPHQD 179
           RP  N+  G+R  +R+ ++ET G     S  +D
Sbjct: 349 RPSTNELSGARLLIRKAYKETAGSNFQISDIKD 381


>Z66560-1|CAA91449.1|  214|Caenorhabditis elegans Hypothetical
           protein D1053.1 protein.
          Length = 214

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 169 RIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGP-VRMPTXIL 297
           R+RI L  +NV   E    DL++   K KL+   P  ++PT ++
Sbjct: 19  RVRIALALKNV-DYEYKTVDLLSEEAKSKLKEINPAAKVPTFVV 61


>U44902-1|AAA93318.1|  483|Caenorhabditis elegans serine/threonine
           kinase protein.
          Length = 483

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 108 SRCSVRQRHRETPGRGLPYSPHQDHSYFSQCALTRE 215
           + CS ++RH ETP      +  Q+ S FSQ   T +
Sbjct: 317 AECSAKRRHLETPNEKSTLAERQNAS-FSQPTKTED 351


>AF016685-1|AAG24144.2|  300|Caenorhabditis elegans Hypothetical
           protein F59E11.8 protein.
          Length = 300

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -1

Query: 275 TGPFTRSFCFLAPLIRSAQTFSSERTLREVRV 180
           + P T+SF  L+PL+ + +T  S+   +EV +
Sbjct: 15  SSPETKSFIDLSPLLVTMETILSDNRRKEVPI 46


>AC024770-7|AAP13756.1|  411|Caenorhabditis elegans Checkpoint
           kinase protein 1, isoformb protein.
          Length = 411

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 108 SRCSVRQRHRETPGRGLPYSPHQDHSYFSQCALTRE 215
           + CS ++RH ETP      +  Q+ S FSQ   T +
Sbjct: 225 AECSAKRRHLETPNEKSTLAERQNAS-FSQPTKTED 259


>AC024770-6|AAF59485.2|  503|Caenorhabditis elegans Checkpoint
           kinase protein 1, isoforma protein.
          Length = 503

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 108 SRCSVRQRHRETPGRGLPYSPHQDHSYFSQCALTRE 215
           + CS ++RH ETP      +  Q+ S FSQ   T +
Sbjct: 317 AECSAKRRHLETPNEKSTLAERQNAS-FSQPTKTED 351


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,835,789
Number of Sequences: 27780
Number of extensions: 130032
Number of successful extensions: 304
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 304
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 333802358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)