Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP08_F_O08
(655 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30D10.08 |mgm101||mitochondrial nucleoid protein|Schizosacch... 30 0.34
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 29 0.77
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 28 1.0
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce... 28 1.4
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2... 27 2.4
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 27 3.1
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 26 4.1
SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces... 26 5.5
SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy... 26 5.5
SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomy... 25 7.2
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 25 7.2
SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo... 25 9.5
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb... 25 9.5
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha... 25 9.5
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 25 9.5
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p... 25 9.5
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 9.5
SPBC1271.07c |||N-acetyltransferase |Schizosaccharomyces pombe|c... 25 9.5
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|... 25 9.5
>SPBC30D10.08 |mgm101||mitochondrial nucleoid
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 267
Score = 29.9 bits (64), Expect = 0.34
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = -1
Query: 415 SSVLLKTDNRGYSLYCHDRTCLLKTGSRDYLLCYHDQTSRQKTGSRGYFQCCHD 254
++V K+ +R Y+L CH R + G + Y T+ + S +CC D
Sbjct: 162 TNVTSKSVSREYALVCHGRLVSVARGEQTYFDPEGIATASEGCKSNALMRCCKD 215
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 28.7 bits (61), Expect = 0.77
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Frame = +1
Query: 469 PPQIRYNP---PHGPPMVYPVYHGTPPTYVY-QAQNSGSK 576
P ++Y P P P YPVYH TP T + SGS+
Sbjct: 405 PNMVQYGPILQPGYVPQYYPVYHQTPYTQNFPNMSRSGSQ 444
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 28.3 bits (60), Expect = 1.0
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 337 YPSSGGMSGHGNTGSSHGYPSSGGQSYP 420
Y ++GG +G NT + YPSS G + P
Sbjct: 1519 YYTTGGFTGGNNTNVTGLYPSSAGANKP 1546
>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 27.9 bits (59), Expect = 1.4
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -1
Query: 214 TLTIRRDQKVLRTLDTNV-CFHHRISWMSH 128
T+ IRRDQ V+ T D FH W++H
Sbjct: 194 TVVIRRDQSVVYTGDVGTNFFHSPTKWITH 223
>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 479
Score = 27.1 bits (57), Expect = 2.4
Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Frame = +3
Query: 348 RRHV---RSWQYRE*PRLSVFRRTELPKNDSYYNNTQ-PLSLQSPATNKIQSAPRPTNGL 515
RRH S + ++ PRLS +R L KND+ N+Q P + S A IQS P
Sbjct: 98 RRHTPQTNSQKSQKTPRLSSNKRRTL-KNDAKQRNSQSPGTDTSDANLTIQSIEAPRRA- 155
Query: 516 PSLPRNPSDLRLPGAKLWKQIRNA 587
P+ SD P + IR++
Sbjct: 156 ---PQRLSDFFTPDGRRVSNIRDS 176
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 426 DSYYNNTQPLSLQSPATNKIQSAPRPTNGLPSLPRNPSD 542
DS + T+ L++Q TN+I+ P T LP+ PS+
Sbjct: 738 DSGLSKTERLTIQQ--TNEIKHVPTNTTSSVKLPQQPSN 774
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 5/36 (13%)
Frame = +1
Query: 466 PPPQIRY---NPPHGPPMVYPVYHGT--PPTYVYQA 558
PP Q + PPH PP +P +H PP Y +Q+
Sbjct: 164 PPTQHHHPHTRPPHHPP--HPHFHNNNYPPPYCFQS 197
>SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 338
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +3
Query: 405 RTELPKNDSYYNNTQPLSLQSPATNKIQSAPRPTNGL 515
R K+D N P + P+ ++Q R TNGL
Sbjct: 209 RLRSQKSDKVMNKGYPFGYRIPSVGQLQLILRQTNGL 245
>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 656
Score = 25.8 bits (54), Expect = 5.5
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -1
Query: 511 PLVGRGADCILFVAGDCSDNGCVLL*YESFLGSSVL 404
PL+ R L G+ S+ VLL +SF+G+ VL
Sbjct: 259 PLISRHGRYKLQTPGNASNGKAVLLLLKSFVGTGVL 294
>SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 492
Score = 25.4 bits (53), Expect = 7.2
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +1
Query: 487 NPPHGPPMVYPVYHG 531
N HGPPMV+P G
Sbjct: 289 NADHGPPMVFPAPFG 303
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 465 SPATNKIQSAPRPTNGLPSLPRNP 536
+P N + S+P + PSLP NP
Sbjct: 409 TPQINVVPSSPSKSQSGPSLPANP 432
>SPAC15A10.06 |||CPA1 sodium ion/proton
antiporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +2
Query: 506 QWSTQFTTEPLRPTFTRRKTLEANTER 586
QW T+F E ++P R L+ T++
Sbjct: 543 QWLTRFDEEVIKPVLLERDNLKNGTKK 569
>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 424
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = -1
Query: 349 LKTGSRDYLLCYHDQTSRQKTGSRGYFQCCHDQIGRQKM 233
+K ++D +L + Q GY + CH+Q+ +KM
Sbjct: 381 MKQTAKDVMLEHQKQRCLPGIQYDGYARFCHEQLSPEKM 419
>SPBC609.03 |||WD repeat protein, human IQWD1
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = +3
Query: 168 VSKVRRTFWSRRIVRVGRTRIS--IFWRPIWSW 260
+S VRR FW +++R IS I+W W
Sbjct: 524 LSSVRRFFWIHKVLRGCLLLISSDIYWEQFQPW 556
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = +1
Query: 466 PPPQIRYN-PPHGPPMVYPVYH 528
P PQ++ + PP PPM P+Y+
Sbjct: 347 PTPQVQGSRPPPPPPMPAPIYN 368
>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 473
Score = 25.0 bits (52), Expect = 9.5
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +3
Query: 402 RRTELPKNDSYYNNTQPLSLQSPATNKIQSAPRPTNGLPSLPR-NPSDLRLPGAK 563
R+ ++ + P + Q PA + +QSAP P + R PS +++P K
Sbjct: 306 RQMQMQQQQKAQQQQSPKAQQPPA-HLVQSAPVQRKTTPKIQRLPPSSIQIPPPK 359
>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 682
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = +3
Query: 357 VRSWQY-RE*PRLSVFRRTELPKNDSYYNNTQPLSLQSPATNKIQSAPRPTNGLP 518
V S+ Y R P + ++ + Y + QP+ + +I + P NGLP
Sbjct: 314 VNSYSYDRYTPNQPSYLESKPGNHQPSYTSEQPMYSTASVPQQISNGPTAVNGLP 368
>SPBC1271.07c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 163
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 472 PQIRYNPPHGPPMVYPVYHGT 534
P +Y PPHG +V HGT
Sbjct: 48 PMRKYGPPHGIMLVARDEHGT 68
>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 310
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +3
Query: 438 NNTQPLSLQSPATNKIQSAPRP 503
+N +P+S P+ +KI S+P P
Sbjct: 260 SNVEPVSQPQPSPDKIVSSPNP 281
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,494,583
Number of Sequences: 5004
Number of extensions: 51035
Number of successful extensions: 201
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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