Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_O07
         (406 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.06 |rps2801|rps28-1|40S ribosomal protein S28|Schizosa...    50   2e-07
SPCC285.15c |rps2802|rps28-2, rps28|40S ribosomal protein S28|Sc...    50   2e-07
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    25   4.5  
SPAPB17E12.08 |||N-glycosylation protein |Schizosaccharomyces po...    24   7.8  

>SPAC25G10.06 |rps2801|rps28-1|40S ribosomal protein
           S28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 68

 Score = 49.6 bits (113), Expect = 2e-07
 Identities = 23/33 (69%), Positives = 27/33 (81%)
 Frame = +1

Query: 130 RXQCTQVKVEFIGETSRQIIRNVKGPVRDGDIL 228
           R   TQV+VEF+ +TSR IIRNVKGPVR+ DIL
Sbjct: 23  RGGVTQVRVEFMDDTSRSIIRNVKGPVREDDIL 55



 Score = 32.3 bits (70), Expect = 0.029
 Identities = 18/34 (52%), Positives = 24/34 (70%)
 Frame = +3

Query: 81  PNVLARVVKVLGRTGSQGPVYSSEGRVHWGDQPS 182
           P  LA+V+KVLGRTGS+G V  ++ RV + D  S
Sbjct: 7   PVKLAKVIKVLGRTGSRGGV--TQVRVEFMDDTS 38


>SPCC285.15c |rps2802|rps28-2, rps28|40S ribosomal protein
           S28|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 68

 Score = 49.6 bits (113), Expect = 2e-07
 Identities = 23/33 (69%), Positives = 27/33 (81%)
 Frame = +1

Query: 130 RXQCTQVKVEFIGETSRQIIRNVKGPVRDGDIL 228
           R   TQV+VEF+ +TSR IIRNVKGPVR+ DIL
Sbjct: 23  RGGVTQVRVEFMDDTSRSIIRNVKGPVREDDIL 55



 Score = 32.3 bits (70), Expect = 0.029
 Identities = 18/34 (52%), Positives = 24/34 (70%)
 Frame = +3

Query: 81  PNVLARVVKVLGRTGSQGPVYSSEGRVHWGDQPS 182
           P  LA+V+KVLGRTGS+G V  ++ RV + D  S
Sbjct: 7   PVKLAKVIKVLGRTGSRGGV--TQVRVEFMDDTS 38


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 173 PAVRSSET*KDPSVTETSSLFLNLNVKL 256
           PAV SSET    S+T T S + + +V +
Sbjct: 209 PAVSSSETLTSVSITSTESAYTSSSVDI 236


>SPAPB17E12.08 |||N-glycosylation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 166

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -2

Query: 99  HEQERWVYPFWLVISSLMQ*AHVHQSWRVS 10
           H    ++ P W+ IS     A++ Q W  S
Sbjct: 76  HGDNAYLLPAWIAISCFQTAAYIVQDWITS 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,597,067
Number of Sequences: 5004
Number of extensions: 26968
Number of successful extensions: 64
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)