Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_O03
         (659 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr 1...    28   1.0  
SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces ...    27   1.8  
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    27   3.2  
SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomy...    27   3.2  
SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy...    25   7.3  
SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    25   7.3  
SPBC27.06c |mgr2||mitochondrial membrane protein Mgr1 |Schizosac...    25   9.7  
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ...    25   9.7  

>SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 588

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 422 EALDKLHHGEAVTPLGRRVYADLDRPLERYP 514
           EA + L+H E VT   ++ +   DRP+  YP
Sbjct: 86  EATEALYHAEQVTEERKKHFEHHDRPIGSYP 116


>SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 305

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = +2

Query: 479 YADLDRPLERYPTPIVKDEPQTVPSAASTPPLSPIDMDTQEKIKLERKRQRNRV 640
           + D   P   Y TP  K     VP  +S+PPLS      Q   +   +R  +R+
Sbjct: 171 FEDASSPQSSYHTP-TKRRKNAVPRKSSSPPLSSTKHAPQSTERRPVRRSESRL 223


>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
 Frame = +2

Query: 479 YADLDRPLERYPTP-----IVKDEPQTVPSAASTPPLSPIDMDTQEKIKL 613
           Y D  R ++R  TP     I K+E  TVP     PP    D +T  K+ +
Sbjct: 252 YKDSKREMKRSNTPWSNASIKKNEVPTVPIRYKPPPWRDSDFETVPKLPI 301


>SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +2

Query: 605 IKLERKRQRNRVAASKCR 658
           +K  R  +RNR+AASKCR
Sbjct: 268 MKRRRFLERNRIAASKCR 285


>SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 386

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 374 AVAPTEEQEMYARPFVEALDKLHHGEAVTPLGR 472
           A    +E E YA+PFVE  +K +   A    G+
Sbjct: 190 ASGKADESEFYAQPFVEEGEKDYDEAAAAKAGK 222


>SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 594

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
 Frame = +2

Query: 140 TTFYDEQYPLSGPVENLKRPLTLDVGRGGKRSRIAAPVLSSPDLQMLKLGSPELEKLIIQ 319
           T   ++  P+ GP+  +  P   D     K + IAA ++S  +  +L L  P+L     +
Sbjct: 174 TNMANQPCPVPGPISAVISPEISDKESLEKATDIAAELISKKEKPIL-LAGPKLRAAGAE 232

Query: 320 NGMVXXXXXXXXXXVLFPAVAP--TEEQEMYA 409
           +  V           + PA     +EE + YA
Sbjct: 233 SAFVKLAEALNCAAFIMPAAKGFYSEEHKNYA 264


>SPBC27.06c |mgr2||mitochondrial membrane protein Mgr1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 120

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = -3

Query: 552 LGTVWGSSFTMGVGYRSSGLSKSAYTLRPSG-VTASPWCSLSSASTKGRAYISCSSV 385
           +G + GS+  +G+G+   G++   Y   P G +       L+SA+T G  ++S  SV
Sbjct: 14  MGAIMGSAAGLGIGFLFGGVAVLRYGPGPRGFLRTLGQYMLTSAATFG-FFMSIGSV 69


>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = -3

Query: 192 LRFSTGPLRGYCSS*KVVSMLWPEFRTMCLHRTLRYH*THYANFITFSYXLTHVLL 25
           L  S G +RG+ +S +V++ +     +  + R LR +     N +TFS  L+  L+
Sbjct: 361 LNKSMGEVRGFHTSSRVLNTVTKSNNSKPIQRPLRENIFTLPNLLTFSRLLSAPLI 416


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,746,678
Number of Sequences: 5004
Number of extensions: 56500
Number of successful extensions: 183
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)