Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_N23
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomy...    40   4e-04
SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomy...    29   0.44 
SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase...    28   1.4  
SPCC4F11.02 |ptc1||protein phosphatase 2C Ptc1|Schizosaccharomyc...    27   2.4  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    27   2.4  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    26   5.5  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    26   5.5  
SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyc...    25   9.5  
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    25   9.5  
SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces pom...    25   9.5  

>SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 370

 Score = 39.5 bits (88), Expect = 4e-04
 Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
 Frame = +3

Query: 438 IKGRRMHMEDRF--IIN---ENVNNTGISLFAIFDGHGGEFAANYAKDHL 572
           ++G R+ MED    ++N    N +N   S F +FDGHGG+  A Y + HL
Sbjct: 29  MQGWRISMEDAHCALLNFTDSNSSNPPTSFFGVFDGHGGDRVAKYCRQHL 78


>SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 414

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
 Frame = +3

Query: 435 AIKGRRMHMEDRF--IINENVN--NTGISLFAIFDGHGGEFAANYAKDHLIQNL 584
           +++G R+ MED    I++   +     +  FA++DGHGG+  A +   +L Q L
Sbjct: 28  SMQGWRISMEDAHSAILSMECSAVKDPVDFFAVYDGHGGDKVAKWCGSNLPQIL 81


>SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 444

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +3

Query: 474 IINENVNNTGISLFAIFDGHGGEFAANYAKDHLI 575
           +I+ N++      + IFDGH G   + + + HL+
Sbjct: 104 VIDRNIDEGNWYFWGIFDGHSGWNTSLFLRQHLV 137


>SPCC4F11.02 |ptc1||protein phosphatase 2C Ptc1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 347

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 450 RMHMEDRFI-INENVNNTGISLFAIFDGHGGEFAANYAKDHLIQNLYNK 593
           R  MED  I + +   N      A++DGH G  A++Y + +L + L  K
Sbjct: 83  RRSMEDTHICLYDFGGNQDDGFVAVYDGHAGIQASDYCQKNLHKVLLEK 131


>SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1150

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 31/138 (22%), Positives = 55/138 (39%)
 Frame = +3

Query: 183  DAPVSYLWKMVRLYFLRSEVVVITLAIVIFLMYLQSIELWSRTMLSRLSQAMNPMSAVQR 362
            DAP+ YL  +  L  L       T  + + +++    + +S   L  +S         + 
Sbjct: 762  DAPIRYLSDLSNLELL------FTKHVAVLILHPLVRDYYSLDELMEMSDLRKGGFWEKF 815

Query: 363  MKLMEGSDADKQSWELKGTLSAAYAIKGRRMHMEDRFIINENVNNTGISLFAIFDGHGGE 542
             K  +G DA+K++ + KGT      I   R +        ++   TG+ +  I    G  
Sbjct: 816  GKAFKGKDAEKKNVKKKGTFGVPLEILVERNNA-------QSTVGTGVGVKHIPAFIGNT 868

Query: 543  FAANYAKDHLIQNLYNKN 596
             AA   KD  +  ++ KN
Sbjct: 869  LAAMKRKDMSVVGVFRKN 886


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/54 (22%), Positives = 29/54 (53%)
 Frame = +3

Query: 288  SIELWSRTMLSRLSQAMNPMSAVQRMKLMEGSDADKQSWELKGTLSAAYAIKGR 449
            +++L     L  L  + N ++ + + K+++  D  KQSWE   + ++ + I+ +
Sbjct: 1620 TLQLLMLNCLWELFHSDNMLTNIPKRKMVKLLDILKQSWEFAESFNSDFEIRAK 1673


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 260 YCDLLNVSSKYRIMESNNAKQTVASDESY 346
           Y +LLN S +YR +   NA + +  D  +
Sbjct: 450 YAELLNFSEQYRRLSIKNATKNLTKDNFF 478


>SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/40 (22%), Positives = 20/40 (50%)
 Frame = +3

Query: 477 INENVNNTGISLFAIFDGHGGEFAANYAKDHLIQNLYNKN 596
           + +  N      + +FDGHGG   + +   +L + + N++
Sbjct: 76  LKDTTNRDSPFFYGLFDGHGGTECSEFLSTNLGKIIENQD 115


>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1010

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -1

Query: 236 RSQKIKTHHF-P*IAHRSVKKSATGESRQYFYKRNVRLM*YSVFYLVFHVP 87
           R+ K+ T    P +    ++  +TG+S Q++ K N+R     VF  ++  P
Sbjct: 659 RTSKVATRWLLPALMAFYIEIESTGQSTQFYDKFNIRFYICEVFRTIWKQP 709


>SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 407

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/48 (27%), Positives = 19/48 (39%)
 Frame = +2

Query: 251 HTSYCDLLNVSSKYRIMESNNAKQTVASDESYERCSTNETHGGIRCRQ 394
           HT  C L  V    ++   NN   T A+    +       H G++C Q
Sbjct: 360 HTEECVLATVDPTEKVRIDNNVDPTTATSMDEDE-DEEGGHPGVQCAQ 406


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,435,728
Number of Sequences: 5004
Number of extensions: 46608
Number of successful extensions: 137
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)