Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_N23
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC026301-13|AAP13737.1|  766|Caenorhabditis elegans Hypothetical...    49   3e-06
U29515-1|AAC06328.1|  449|Caenorhabditis elegans fem-2 protein.        41   9e-04
U28412-8|AAC46598.1|  449|Caenorhabditis elegans Feminization of...    41   9e-04
Z73973-4|CAE54908.1|  367|Caenorhabditis elegans Hypothetical pr...    35   0.044
Z73973-3|CAA98265.1|  468|Caenorhabditis elegans Hypothetical pr...    35   0.044
Z81525-9|CAB04260.1|  242|Caenorhabditis elegans Hypothetical pr...    35   0.058
AL031264-1|CAA20326.1|  242|Caenorhabditis elegans Hypothetical ...    35   0.058
Z81138-2|CAB03473.1| 2265|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z46343-1|CAA86456.2|  356|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AC006834-5|AAF40007.1|  451|Caenorhabditis elegans Hypothetical ...    28   5.0  
AF040651-1|AAB95013.4|  691|Caenorhabditis elegans Nhl (ring fin...    28   6.7  
U40953-6|AAB52651.1|  809|Caenorhabditis elegans Hypothetical pr...    27   8.8  
U39649-4|AAA80385.1|   57|Caenorhabditis elegans Hypothetical pr...    27   8.8  
U00051-13|AAA91358.1|  491|Caenorhabditis elegans Hypothetical p...    27   8.8  
AF106579-6|ABS19465.1|  406|Caenorhabditis elegans Hypothetical ...    27   8.8  
AF077536-4|AAK31409.1|  726|Caenorhabditis elegans Hypothetical ...    27   8.8  

>AC026301-13|AAP13737.1|  766|Caenorhabditis elegans Hypothetical
           protein Y54F10BM.1 protein.
          Length = 766

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
 Frame = +3

Query: 435 AIKGRRMHMEDRFIINENVNNTGI---SLFAIFDGHGGEFAANYAKDHLIQNL 584
           A +G R +MEDR +I+    N G+   +   +FDGHGGE A+ Y + HL+ N+
Sbjct: 25  ASQGGRRYMEDRCVIHTERINNGLLDWTFVGVFDGHGGEHASEYVRRHLLMNI 77


>U29515-1|AAC06328.1|  449|Caenorhabditis elegans fem-2 protein.
          Length = 449

 Score = 40.7 bits (91), Expect = 9e-04
 Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
 Frame = +3

Query: 438 IKGRRMHMEDRFII--NENVNNTG---ISLFAIFDGHGGEFAANYAKDHL 572
           +KG+R   EDRF+   N    + G   IS+ A+FDGHGG   + YA  HL
Sbjct: 168 LKGQRHKQEDRFLAYPNGQYMDRGEDPISVLAVFDGHGGHECSQYAAGHL 217


>U28412-8|AAC46598.1|  449|Caenorhabditis elegans Feminization of xx
           and xo animalsprotein 2 protein.
          Length = 449

 Score = 40.7 bits (91), Expect = 9e-04
 Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
 Frame = +3

Query: 438 IKGRRMHMEDRFII--NENVNNTG---ISLFAIFDGHGGEFAANYAKDHL 572
           +KG+R   EDRF+   N    + G   IS+ A+FDGHGG   + YA  HL
Sbjct: 168 LKGQRHKQEDRFLAYPNGQYMDRGEDPISVLAVFDGHGGHECSQYAAGHL 217


>Z73973-4|CAE54908.1|  367|Caenorhabditis elegans Hypothetical
           protein F25D1.1b protein.
          Length = 367

 Score = 35.1 bits (77), Expect = 0.044
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
 Frame = +3

Query: 435 AIKGRRMHMEDRFIINENVNNTGI----SLFAIFDGHGGEFAANYAKDHLIQNL 584
           +++G R+ MED  I    ++ +      S FA+FDGH G   AN A   L+++L
Sbjct: 10  SMQGWRICMEDSHIAEAIMSQSSPYKDWSFFAVFDGHAGHHIANRASSQLLEHL 63


>Z73973-3|CAA98265.1|  468|Caenorhabditis elegans Hypothetical
           protein F25D1.1a protein.
          Length = 468

 Score = 35.1 bits (77), Expect = 0.044
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
 Frame = +3

Query: 435 AIKGRRMHMEDRFIINENVNNTGI----SLFAIFDGHGGEFAANYAKDHLIQNL 584
           +++G R+ MED  I    ++ +      S FA+FDGH G   AN A   L+++L
Sbjct: 111 SMQGWRICMEDSHIAEAIMSQSSPYKDWSFFAVFDGHAGHHIANRASSQLLEHL 164


>Z81525-9|CAB04260.1|  242|Caenorhabditis elegans Hypothetical
           protein F33A8.6 protein.
          Length = 242

 Score = 34.7 bits (76), Expect = 0.058
 Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 7/78 (8%)
 Frame = +3

Query: 381 SDADKQSWELKGTLSAAYAIKGRRMHMEDRFII-------NENVNNTGISLFAIFDGHGG 539
           S   K+S  L  TL+A    KG R  M+D  I+        E    +  S FAIFDGH G
Sbjct: 20  SKKPKESRNLYCTLAAYGCRKGERADMQDTHIMLPKFDLGTEKSFLSRASFFAIFDGHAG 79

Query: 540 EFAANYAKDHLIQNLYNK 593
             AA + +  + + +  K
Sbjct: 80  PRAAEHCQSQMGKTVKEK 97


>AL031264-1|CAA20326.1|  242|Caenorhabditis elegans Hypothetical
           protein F33A8.6 protein.
          Length = 242

 Score = 34.7 bits (76), Expect = 0.058
 Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 7/78 (8%)
 Frame = +3

Query: 381 SDADKQSWELKGTLSAAYAIKGRRMHMEDRFII-------NENVNNTGISLFAIFDGHGG 539
           S   K+S  L  TL+A    KG R  M+D  I+        E    +  S FAIFDGH G
Sbjct: 20  SKKPKESRNLYCTLAAYGCRKGERADMQDTHIMLPKFDLGTEKSFLSRASFFAIFDGHAG 79

Query: 540 EFAANYAKDHLIQNLYNK 593
             AA + +  + + +  K
Sbjct: 80  PRAAEHCQSQMGKTVKEK 97


>Z81138-2|CAB03473.1| 2265|Caenorhabditis elegans Hypothetical protein
            W05B2.4 protein.
          Length = 2265

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 141  FVKILSRFTSSTFLDAPVSYLW 206
            FVK++S+F SST  D  V +LW
Sbjct: 1672 FVKMISKFLSSTVGDLTVEFLW 1693


>Z46343-1|CAA86456.2|  356|Caenorhabditis elegans Hypothetical
           protein T23F11.1 protein.
          Length = 356

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +3

Query: 420 LSAAYAIKGRRMHMEDRFI-INENVNNTGISLFAIFDGHGGEFAANYA 560
           L  +  ++G R+ MED    +    ++   + FA++DGHGG   + Y+
Sbjct: 23  LVGSSCMQGWRVDMEDAHTHLLSLPDDPKCAFFAVYDGHGGSKVSQYS 70


>AC006834-5|AAF40007.1|  451|Caenorhabditis elegans Hypothetical
           protein ZK973.3 protein.
          Length = 451

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 510 LFAIFDGHGGEFAANYAKDHLIQNLYNKNC 599
           LF +FDGHGG+  +     H+  NLY   C
Sbjct: 69  LFGVFDGHGGQQCSR----HISTNLYPYLC 94


>AF040651-1|AAB95013.4|  691|Caenorhabditis elegans Nhl (ring finger
           b-box coiled coil)domain containing protein 3 protein.
          Length = 691

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
 Frame = +3

Query: 216 RLYFLRSEVVVITLAIVIFLMYLQSIEL----WSRTMLSRLSQAMNPMSAVQRMKLMEGS 383
           R+  LR    VIT +  + ++YL + EL    W R MLS+L+     + AVQ  +  + +
Sbjct: 465 RVRVLRDNGDVITDSGTVGMVYLGNEELVVLSWQRKMLSKLNTRGEILKAVQFSEFYQPT 524

Query: 384 D 386
           D
Sbjct: 525 D 525


>U40953-6|AAB52651.1|  809|Caenorhabditis elegans Hypothetical
           protein F53B1.8 protein.
          Length = 809

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 507 SLFAIFDGHGGEFAANYAKDHLIQNLYNKNC 599
           S +  FDG   ++ A Y+KD  + N  NK C
Sbjct: 574 SAYPEFDGSIPDYNATYSKDPELMNSCNKQC 604


>U39649-4|AAA80385.1|   57|Caenorhabditis elegans Hypothetical
           protein T23F2.3 protein.
          Length = 57

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -3

Query: 423 LTCLSVPNFACLHRIPP*VSFVEQRS*DSSLATVCLAL 310
           LTC  +P F C   +PP   F+E +  D  LA +C+ L
Sbjct: 3   LTCTDIPKFICAVLLPPIGVFLE-KGCDYHLA-ICILL 38


>U00051-13|AAA91358.1|  491|Caenorhabditis elegans Hypothetical
           protein F42G9.1a protein.
          Length = 491

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/63 (23%), Positives = 30/63 (47%)
 Frame = +3

Query: 384 DADKQSWELKGTLSAAYAIKGRRMHMEDRFIINENVNNTGISLFAIFDGHGGEFAANYAK 563
           + +K+     G   A   ++G R++ ED      +++ T   +F ++DGHGG   + +  
Sbjct: 11  EKEKEEGSGNGLSYACTTMQGWRVNQEDAHNCVVDLH-TDWHMFGVYDGHGGTEVSKFTS 69

Query: 564 DHL 572
             L
Sbjct: 70  AKL 72


>AF106579-6|ABS19465.1|  406|Caenorhabditis elegans Hypothetical
           protein F54E2.4 protein.
          Length = 406

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 324 LSQAMNPMSAVQRMKLMEGSDADKQSWELKGTLS 425
           LSQ + P S  Q+    +G D D+ S ++  T+S
Sbjct: 250 LSQTLRPSSVAQKQMQKQGYDTDQGSVDMHWTIS 283


>AF077536-4|AAK31409.1|  726|Caenorhabditis elegans Hypothetical
           protein C16A11.3 protein.
          Length = 726

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = +3

Query: 339 NPMSAVQRMKLMEGSDADKQSWELK-GTLSAAYAIKGRRM-HMEDRFIINENVNNTGISL 512
           N   AV+  K  E S+  +QSW  +   + A  AI    +  MED + INE+V N  + +
Sbjct: 412 NKKYAVKLFK-EEHSEVGEQSWARETAIMKAVTAINSANLIRMEDSWRINESVPNGFLKI 470

Query: 513 FAIFDGHG 536
              F+  G
Sbjct: 471 AISFELKG 478


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,306,105
Number of Sequences: 27780
Number of extensions: 257832
Number of successful extensions: 630
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)