Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP08_F_N21
(656 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces... 32 0.063
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c... 30 0.26
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces... 29 0.59
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo... 28 1.4
SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|... 28 1.4
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch... 26 5.5
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 26 5.5
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 25 7.3
SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomy... 25 9.6
SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharom... 25 9.6
>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 577
Score = 32.3 bits (70), Expect = 0.063
Identities = 24/104 (23%), Positives = 37/104 (35%), Gaps = 2/104 (1%)
Frame = +2
Query: 350 FQWLLLLSCGAVYAVCALSTTTLSFVLPATK--NDFELSSSDKGRLTATPLIGMCVGSYF 523
F+ L +C Y S + F +PA F +S + L+G C G
Sbjct: 131 FKRKLKTTCILAYVALCSSFASSVFAVPAEAITTVFHISLTVSLLTMTVFLLGYCSGPII 190
Query: 524 WGNLADARGRKXXXXXXXXXXXXXXXXSSVVQSFSGFLACRFFS 655
W L++ GRK +V + + CRFF+
Sbjct: 191 WAPLSELSGRKPPILIGMLGFGIFNISVAVGKDIQTIMMCRFFA 234
>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 554
Score = 30.3 bits (65), Expect = 0.26
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Frame = +2
Query: 323 ALHHAGYGCFQWLLLLSCGAVYA---VCALSTTTLSFVLPATKNDFELSSSDKGRLTATP 493
A++ G+G +QW L G + + + T+ + L + LT +
Sbjct: 68 AMNEIGFGRYQWYLFFVAGFGWMSDNIWPVCTSLILMRLDEVDGPHPPAEGRAPYLTLSQ 127
Query: 494 LIGMCVGSYFWGNLADARGRK 556
+G+ VG+ W AD GR+
Sbjct: 128 NLGLLVGAMVWSLSADTIGRR 148
>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 580
Score = 29.1 bits (62), Expect = 0.59
Identities = 12/53 (22%), Positives = 20/53 (37%)
Frame = +2
Query: 494 LIGMCVGSYFWGNLADARGRKXXXXXXXXXXXXXXXXSSVVQSFSGFLACRFF 652
++G C+G W +++ GRK + Q + CRFF
Sbjct: 184 MLGYCLGPICWAPMSEITGRKTPLYIGLFLFSVFQIAVATAQDIQTIMICRFF 236
>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
Itr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 575
Score = 27.9 bits (59), Expect = 1.4
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Frame = +2
Query: 356 WLLLLSCGAVYAVCALSTTTLS---FVLPATKNDFELSSSDKGRLTATPLIGMCVGSYFW 526
W+L + G + T +S V+ + EL++ K +T+ +G +G
Sbjct: 88 WVLAFAAGIGGLLFGYDTGVISGALVVIGTSLGGHELTNGGKEFITSATSLGALLGGIIA 147
Query: 527 GNLADARGRK 556
G LAD GRK
Sbjct: 148 GALADFFGRK 157
>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 387
Score = 27.9 bits (59), Expect = 1.4
Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +2
Query: 341 YGCFQW--LLLLSCGAVYAVCALSTTTLSFVLPATKNDFELSSSDKGRLTATPLIGMCVG 514
YG +++ + + G + + + T L + LPA + F ++ L+A P IG +
Sbjct: 103 YGSYKYPRTMTWNIGVIIFLLTIITAFLGYCLPANQMSFWGATVITNLLSAVPFIGDDLV 162
Query: 515 SYFWGNLA 538
WG +
Sbjct: 163 HLLWGGFS 170
>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 679
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -2
Query: 655 GEEPASQEPGEGLHNAGQERGQSIQK*SSNDGDLSASSVRQVT 527
G +P+S + E N ER +S N G +S++S + T
Sbjct: 538 GTDPSSSKTTENNGNQQSERTESADGKKDNSGSISSNSSKTFT 580
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1778
Score = 25.8 bits (54), Expect = 5.5
Identities = 10/12 (83%), Positives = 12/12 (100%)
Frame = -2
Query: 376 AGQQQQPLEASV 341
AGQQQQPL+AS+
Sbjct: 624 AGQQQQPLQASI 635
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 25.4 bits (53), Expect = 7.3
Identities = 11/43 (25%), Positives = 22/43 (51%)
Frame = -2
Query: 652 EEPASQEPGEGLHNAGQERGQSIQK*SSNDGDLSASSVRQVTP 524
E P +EPG +G ++ S + ++ + DL+ +S + P
Sbjct: 61 ENPFREEPGADFDRSGSDQQYSAEAEANQEDDLNETSQQAPDP 103
>SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 25.0 bits (52), Expect = 9.6
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = -2
Query: 436 GGQHEAERGRAECAD-GVHGAAGQQQQP 356
GG HE RAE +D GV+ G Q P
Sbjct: 40 GGNHEVGEKRAESSDIGVYECRGPVQGP 67
>SPAC890.04c |||ribosome biogenesis protein Ytm1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 440
Score = 25.0 bits (52), Expect = 9.6
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -3
Query: 636 RNPEKDCTTLDRNAARASKSRAPMMAIFRPRASAKLP 526
R+PE TTL+ ++ SK R A F P+A A+ P
Sbjct: 228 RSPE---TTLESFSSSISKKRRRKNAEFTPQAGARSP 261
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,323,072
Number of Sequences: 5004
Number of extensions: 43099
Number of successful extensions: 140
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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