Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP08_F_N21
(656 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z22175-2|CAA80131.2| 520|Caenorhabditis elegans Hypothetical pr... 48 8e-06
Z11115-20|CAA77460.2| 520|Caenorhabditis elegans Hypothetical p... 48 8e-06
AL161712-10|CAC35900.1| 533|Caenorhabditis elegans Hypothetical... 31 0.95
AC024793-1|AAF60692.2| 649|Caenorhabditis elegans Atm (ataxia t... 31 0.95
AC006638-8|AAK85487.2| 644|Caenorhabditis elegans Hypothetical ... 29 2.9
U37548-10|AAR30210.1| 1418|Caenorhabditis elegans Calcium channe... 29 3.8
U37548-9|AAR25651.1| 1852|Caenorhabditis elegans Calcium channel... 29 3.8
U37548-8|AAM51534.1| 1837|Caenorhabditis elegans Calcium channel... 29 3.8
U37548-7|AAR25652.1| 1885|Caenorhabditis elegans Calcium channel... 29 3.8
U37548-6|AAR25653.1| 1844|Caenorhabditis elegans Calcium channel... 29 3.8
AY322480-1|AAP84337.1| 1844|Caenorhabditis elegans T-type voltag... 29 3.8
AY313900-1|AAP79883.1| 1852|Caenorhabditis elegans T-type calciu... 29 3.8
AY313899-1|AAP79882.1| 1885|Caenorhabditis elegans T-type calciu... 29 3.8
AY313898-1|AAP79881.1| 1837|Caenorhabditis elegans T-type calciu... 29 3.8
AF368920-1|AAK53427.1| 1837|Caenorhabditis elegans voltage-depen... 29 3.8
Z69788-8|CAA93644.3| 483|Caenorhabditis elegans Hypothetical pr... 28 6.7
>Z22175-2|CAA80131.2| 520|Caenorhabditis elegans Hypothetical
protein ZK637.1 protein.
Length = 520
Score = 47.6 bits (108), Expect = 8e-06
Identities = 26/90 (28%), Positives = 42/90 (46%)
Frame = +2
Query: 287 SKDRVQRAPFETALHHAGYGCFQWLLLLSCGAVYAVCALSTTTLSFVLPATKNDFELSSS 466
S D + + A+ G+G FQ L + G + A+ LS + PA ++ +SS
Sbjct: 60 SPDSEKTFTVDEAVEALGFGRFQLKLSILTGMAWMADAMEMMLLSLISPALACEWGISSV 119
Query: 467 DKGRLTATPLIGMCVGSYFWGNLADARGRK 556
+ +T GM + S FWG + D GR+
Sbjct: 120 QQALVTTCVFSGMMLSSTFWGKICDRFGRR 149
>Z11115-20|CAA77460.2| 520|Caenorhabditis elegans Hypothetical
protein ZK637.1 protein.
Length = 520
Score = 47.6 bits (108), Expect = 8e-06
Identities = 26/90 (28%), Positives = 42/90 (46%)
Frame = +2
Query: 287 SKDRVQRAPFETALHHAGYGCFQWLLLLSCGAVYAVCALSTTTLSFVLPATKNDFELSSS 466
S D + + A+ G+G FQ L + G + A+ LS + PA ++ +SS
Sbjct: 60 SPDSEKTFTVDEAVEALGFGRFQLKLSILTGMAWMADAMEMMLLSLISPALACEWGISSV 119
Query: 467 DKGRLTATPLIGMCVGSYFWGNLADARGRK 556
+ +T GM + S FWG + D GR+
Sbjct: 120 QQALVTTCVFSGMMLSSTFWGKICDRFGRR 149
>AL161712-10|CAC35900.1| 533|Caenorhabditis elegans Hypothetical
protein Y66D12A.13 protein.
Length = 533
Score = 30.7 bits (66), Expect = 0.95
Identities = 18/57 (31%), Positives = 24/57 (42%)
Frame = +2
Query: 482 TATPLIGMCVGSYFWGNLADARGRKXXXXXXXXXXXXXXXXSSVVQSFSGFLACRFF 652
T + +IG+ +GS G L+D GRK SS S F+ RFF
Sbjct: 118 TTSQMIGIMLGSAIAGQLSDLYGRKKITLLFLCMMLFFSTSSSFSSSIEVFIIVRFF 174
>AC024793-1|AAF60692.2| 649|Caenorhabditis elegans Atm (ataxia
telangectasia mutated)family protein 1 protein.
Length = 649
Score = 30.7 bits (66), Expect = 0.95
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = -1
Query: 206 YHTKIVFLVTAAIHSVCLSALSHLY*LTECKILKL*FDSRTIF*RHLSRSECRVSTER 33
++ KI+ V +HSVC+ LS L E + ++ + T F + + S CR S R
Sbjct: 3 HYKKIIHQVLLKLHSVCIGQLSKLEEYRETRTYRMKQQAVTAFEQQIQNS-CRTSLAR 59
>AC006638-8|AAK85487.2| 644|Caenorhabditis elegans Hypothetical
protein F41G4.7 protein.
Length = 644
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = -3
Query: 543 ASAKLPQKYEPTHIPMSGVAVRRPLSDDDSSKSFLVAGSTKLSVVVLSA 397
A A+LP YE +H P +P S+ D KS AGS ++ + A
Sbjct: 139 ARAQLPMNYEASHPP------EQPSSESDEDKSVSSAGSGSITTAAVLA 181
>U37548-10|AAR30210.1| 1418|Caenorhabditis elegans Calcium channel,
alpha subunitprotein 1, isoform f protein.
Length = 1418
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/79 (25%), Positives = 38/79 (48%)
Frame = -2
Query: 541 VRQVTPEVRADAHSDERRGGEAALVGRRQLEVILGGGQHEAERGRAECADGVHGAAGQQQ 362
+RQ PE+R+ + GG +++GRR + + Q ++ R R E + + G+ +
Sbjct: 2 LRQPVPELRSFQSLSKYAGGPRSVLGRRTSAITVNRRQSQSTR-RHEDVEAL-GSIEGSK 59
Query: 361 QPLEASVTGVMQRGLEGRP 305
+ L+ S G + E P
Sbjct: 60 ETLQLSEHGRLASSSEASP 78
>U37548-9|AAR25651.1| 1852|Caenorhabditis elegans Calcium channel,
alpha subunitprotein 1, isoform c protein.
Length = 1852
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/79 (25%), Positives = 38/79 (48%)
Frame = -2
Query: 541 VRQVTPEVRADAHSDERRGGEAALVGRRQLEVILGGGQHEAERGRAECADGVHGAAGQQQ 362
+RQ PE+R+ + GG +++GRR + + Q ++ R R E + + G+ +
Sbjct: 2 LRQPVPELRSFQSLSKYAGGPRSVLGRRTSAITVNRRQSQSTR-RHEDVEAL-GSIEGSK 59
Query: 361 QPLEASVTGVMQRGLEGRP 305
+ L+ S G + E P
Sbjct: 60 ETLQLSEHGRLASSSEASP 78
>U37548-8|AAM51534.1| 1837|Caenorhabditis elegans Calcium channel,
alpha subunitprotein 1, isoform a protein.
Length = 1837
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/79 (25%), Positives = 38/79 (48%)
Frame = -2
Query: 541 VRQVTPEVRADAHSDERRGGEAALVGRRQLEVILGGGQHEAERGRAECADGVHGAAGQQQ 362
+RQ PE+R+ + GG +++GRR + + Q ++ R R E + + G+ +
Sbjct: 2 LRQPVPELRSFQSLSKYAGGPRSVLGRRTSAITVNRRQSQSTR-RHEDVEAL-GSIEGSK 59
Query: 361 QPLEASVTGVMQRGLEGRP 305
+ L+ S G + E P
Sbjct: 60 ETLQLSEHGRLASSSEASP 78
>U37548-7|AAR25652.1| 1885|Caenorhabditis elegans Calcium channel,
alpha subunitprotein 1, isoform d protein.
Length = 1885
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/79 (25%), Positives = 38/79 (48%)
Frame = -2
Query: 541 VRQVTPEVRADAHSDERRGGEAALVGRRQLEVILGGGQHEAERGRAECADGVHGAAGQQQ 362
+RQ PE+R+ + GG +++GRR + + Q ++ R R E + + G+ +
Sbjct: 2 LRQPVPELRSFQSLSKYAGGPRSVLGRRTSAITVNRRQSQSTR-RHEDVEAL-GSIEGSK 59
Query: 361 QPLEASVTGVMQRGLEGRP 305
+ L+ S G + E P
Sbjct: 60 ETLQLSEHGRLASSSEASP 78
>U37548-6|AAR25653.1| 1844|Caenorhabditis elegans Calcium channel,
alpha subunitprotein 1, isoform e protein.
Length = 1844
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/79 (25%), Positives = 38/79 (48%)
Frame = -2
Query: 541 VRQVTPEVRADAHSDERRGGEAALVGRRQLEVILGGGQHEAERGRAECADGVHGAAGQQQ 362
+RQ PE+R+ + GG +++GRR + + Q ++ R R E + + G+ +
Sbjct: 2 LRQPVPELRSFQSLSKYAGGPRSVLGRRTSAITVNRRQSQSTR-RHEDVEAL-GSIEGSK 59
Query: 361 QPLEASVTGVMQRGLEGRP 305
+ L+ S G + E P
Sbjct: 60 ETLQLSEHGRLASSSEASP 78
>AY322480-1|AAP84337.1| 1844|Caenorhabditis elegans T-type voltage
sensitive calciumchannel alpha1 subunit isoform D
protein.
Length = 1844
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/79 (25%), Positives = 38/79 (48%)
Frame = -2
Query: 541 VRQVTPEVRADAHSDERRGGEAALVGRRQLEVILGGGQHEAERGRAECADGVHGAAGQQQ 362
+RQ PE+R+ + GG +++GRR + + Q ++ R R E + + G+ +
Sbjct: 2 LRQPVPELRSFQSLSKYAGGPRSVLGRRTSAITVNRRQSQSTR-RHEDVEAL-GSIEGSK 59
Query: 361 QPLEASVTGVMQRGLEGRP 305
+ L+ S G + E P
Sbjct: 60 ETLQLSEHGRLASSSEASP 78
>AY313900-1|AAP79883.1| 1852|Caenorhabditis elegans T-type calcium
channel alpha1 subunitisoform C protein.
Length = 1852
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/79 (25%), Positives = 38/79 (48%)
Frame = -2
Query: 541 VRQVTPEVRADAHSDERRGGEAALVGRRQLEVILGGGQHEAERGRAECADGVHGAAGQQQ 362
+RQ PE+R+ + GG +++GRR + + Q ++ R R E + + G+ +
Sbjct: 2 LRQPVPELRSFQSLSKYAGGPRSVLGRRTSAITVNRRQSQSTR-RHEDVEAL-GSIEGSK 59
Query: 361 QPLEASVTGVMQRGLEGRP 305
+ L+ S G + E P
Sbjct: 60 ETLQLSEHGRLASSSEASP 78
>AY313899-1|AAP79882.1| 1885|Caenorhabditis elegans T-type calcium
channel alpha1 subunitisoform B protein.
Length = 1885
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/79 (25%), Positives = 38/79 (48%)
Frame = -2
Query: 541 VRQVTPEVRADAHSDERRGGEAALVGRRQLEVILGGGQHEAERGRAECADGVHGAAGQQQ 362
+RQ PE+R+ + GG +++GRR + + Q ++ R R E + + G+ +
Sbjct: 2 LRQPVPELRSFQSLSKYAGGPRSVLGRRTSAITVNRRQSQSTR-RHEDVEAL-GSIEGSK 59
Query: 361 QPLEASVTGVMQRGLEGRP 305
+ L+ S G + E P
Sbjct: 60 ETLQLSEHGRLASSSEASP 78
>AY313898-1|AAP79881.1| 1837|Caenorhabditis elegans T-type calcium
channel alpha1 subunitisoform A protein.
Length = 1837
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/79 (25%), Positives = 38/79 (48%)
Frame = -2
Query: 541 VRQVTPEVRADAHSDERRGGEAALVGRRQLEVILGGGQHEAERGRAECADGVHGAAGQQQ 362
+RQ PE+R+ + GG +++GRR + + Q ++ R R E + + G+ +
Sbjct: 2 LRQPVPELRSFQSLSKYAGGPRSVLGRRTSAITVNRRQSQSTR-RHEDVEAL-GSIEGSK 59
Query: 361 QPLEASVTGVMQRGLEGRP 305
+ L+ S G + E P
Sbjct: 60 ETLQLSEHGRLASSSEASP 78
>AF368920-1|AAK53427.1| 1837|Caenorhabditis elegans
voltage-dependent calcium channelalpha13 subunit
protein.
Length = 1837
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/79 (25%), Positives = 38/79 (48%)
Frame = -2
Query: 541 VRQVTPEVRADAHSDERRGGEAALVGRRQLEVILGGGQHEAERGRAECADGVHGAAGQQQ 362
+RQ PE+R+ + GG +++GRR + + Q ++ R R E + + G+ +
Sbjct: 2 LRQPVPELRSFQSLSKYAGGPRSVLGRRTSAITVNRRQSQSTR-RHEDVEAL-GSIEGSK 59
Query: 361 QPLEASVTGVMQRGLEGRP 305
+ L+ S G + E P
Sbjct: 60 ETLQLSEHGRLASSSEASP 78
>Z69788-8|CAA93644.3| 483|Caenorhabditis elegans Hypothetical
protein F09A5.1 protein.
Length = 483
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +2
Query: 413 TLSFVLPATKNDFELSSSDKGRLTATPLIGMCVGSYFWGNLADARGRK 556
T++ VLP ++ + ++ S G + LI +GS G L D RK
Sbjct: 27 TIAGVLPDVQSYYNINDSMGGMIQTVFLISFMIGSPICGYLGDRFNRK 74
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,349,249
Number of Sequences: 27780
Number of extensions: 256690
Number of successful extensions: 737
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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