Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_N21
         (656 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   3.4  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   4.5  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   4.5  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/34 (29%), Positives = 14/34 (41%)
 Frame = -3

Query: 570 PMMAIFRPRASAKLPQKYEPTHIPMSGVAVRRPL 469
           P  AI R  A    P  ++P       +A R P+
Sbjct: 399 PAFAIHRDSAIYPNPDSFDPERFDQDAMASRHPM 432


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -2

Query: 391 GVHGAAGQQQQPLEASVTGVMQRGLEGRPLHSIFALSVLLHECDTD 254
           G H  AG QQ+P E  VT    +     P      L++L+  C+ D
Sbjct: 289 GYHAIAGGQQRPDENVVTDKKSKVNFALP-ELQHNLNILVDMCEQD 333


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 19/66 (28%), Positives = 28/66 (42%)
 Frame = -2

Query: 451 EVILGGGQHEAERGRAECADGVHGAAGQQQQPLEASVTGVMQRGLEGRPLHSIFALSVLL 272
           +++LGG     E+G A C   V+    Q+   LEA +  V Q   +   L  I     +L
Sbjct: 56  DIVLGGLFPVHEKGGASCGPNVYNRGVQR---LEAMLFAVDQINRDEDILPGITIGVHIL 112

Query: 271 HECDTD 254
             C  D
Sbjct: 113 DTCGRD 118


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,334
Number of Sequences: 438
Number of extensions: 2741
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)