Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP08_F_N18
(582 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz... 224 6e-60
SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz... 224 8e-60
SPAC19D5.05c |||U3 snoRNP-associated protein Imp3 |Schizosacchar... 51 1e-07
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 28 0.87
SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom... 27 2.6
SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein S12|Sch... 26 3.5
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 25 8.1
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 25 8.1
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 25 8.1
>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
S9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 191
Score = 224 bits (548), Expect = 6e-60
Identities = 113/164 (68%), Positives = 131/164 (79%)
Frame = +3
Query: 75 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 254
P SKTY PRRPFE ARLD ELK+ GEYGLRNK E+WRV TL++IR+AARELLTL+E
Sbjct: 5 PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDE 64
Query: 255 KDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRXQTQVFKXGLAKSIHH 434
KDPKRLFEGNA++RRLVR+G+LDE +MKLDYVL L+IEDFLERR QTQVFK GLAKSIHH
Sbjct: 65 KDPKRLFEGNAIIRRLVRLGILDETRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHH 124
Query: 435 ARILIRQRHIRVRKASCEHPIHLLCRPGTLGKHMDFSS*NLPFG 566
AR+LI QRHIRV K P + R T KH+DF+ + P+G
Sbjct: 125 ARVLIFQRHIRVGKQIVNVP-SFVVRLDT-QKHIDFAL-SSPYG 165
>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
S9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 192
Score = 224 bits (547), Expect = 8e-60
Identities = 111/164 (67%), Positives = 130/164 (79%)
Frame = +3
Query: 75 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 254
P SKTY PRRPFE ARLD ELK+ GEYGLRNK E+WRV TL++IR+AARELLTL+E
Sbjct: 5 PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDE 64
Query: 255 KDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRXQTQVFKXGLAKSIHH 434
KDPKRLFEGNA++RRLVR+G+LDE +MKLDYVL L+IEDFLERR QTQVFK GLAKSIHH
Sbjct: 65 KDPKRLFEGNAIIRRLVRLGILDESRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHH 124
Query: 435 ARILIRQRHIRVRKASCEHPIHLLCRPGTLGKHMDFSS*NLPFG 566
AR+LI QRHIRV K P ++ KH+DF+ + P+G
Sbjct: 125 ARVLIFQRHIRVGKQIVNVPSFVVRLDAQ--KHIDFAL-SSPYG 165
>SPAC19D5.05c |||U3 snoRNP-associated protein Imp3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 183
Score = 50.8 bits (116), Expect = 1e-07
Identities = 31/125 (24%), Positives = 54/125 (43%)
Frame = +3
Query: 138 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGV 317
+++ ++ Y + + E + + R+ A L L+ DP RL N LL +L +G+
Sbjct: 28 RDVMVMRRYHISKREEYQKYNIICGKFRQLAHRLSLLDPTDPFRLQYENLLLEKLFDMGI 87
Query: 318 LDEKQMKLDYVLGLKIEDFLERRXQTQVFKXGLAKSIHHARILIRQRHIRVRKASCEHPI 497
L K D + RR + K +++ + A LI Q H+RV P
Sbjct: 88 LPSKSKMSDIENKANVSAICRRRLPVIMCKLRMSQVVSEATRLIEQGHVRVGPHVITDPA 147
Query: 498 HLLCR 512
+L+ R
Sbjct: 148 YLVTR 152
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 28.3 bits (60), Expect = 0.87
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3
Query: 465 RVRKASCEHPIHLLCRPG 518
+ R CEHP LLC PG
Sbjct: 284 KTRGQDCEHPCPLLCHPG 301
>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 26.6 bits (56), Expect = 2.6
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +3
Query: 333 MKLDYVLGLKIEDFLERRXQTQVFKXGLAKSIHHARILIRQRHIRVRKA 479
+++D L + +E FL++ TQ+ +A I + I Q H+ + A
Sbjct: 132 VRMDGALWMAVEQFLQQEFDTQILPCLIAPEILLEFLKIWQNHVNSQTA 180
>SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein
S12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 145
Score = 26.2 bits (55), Expect = 3.5
Identities = 16/71 (22%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Frame = +3
Query: 297 RLVRIGVLDEKQMKLDYVLGLKIEDFLERRXQTQVFKXGLAKSIHHARILI--RQRHIRV 470
++ ++ V++E +++ + +ED L+ + + GLA+ I A + RQ H+ V
Sbjct: 7 QIEQVDVVEEVEVEAAAPETVSVEDALKEVLKRALVHDGLARGIREASKALDRRQAHLCV 66
Query: 471 RKASCEHPIHL 503
SC+ ++
Sbjct: 67 LCESCDQEAYV 77
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 25.0 bits (52), Expect = 8.1
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +3
Query: 192 RVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGL 359
R++YT R+R AR+ LT LF + L+ + +L++KQ + +L L
Sbjct: 1566 RLEYTALRLRSYARKTLT-NSASQNALF---SFLKANFDVALLEQKQTETSNLLRL 1617
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 25.0 bits (52), Expect = 8.1
Identities = 13/53 (24%), Positives = 26/53 (49%)
Frame = +3
Query: 48 LAKMVNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYT 206
++K VN FS + +R + A +D + + E RN++ +++YT
Sbjct: 470 ISKKVNCLYVEAFSSSDAVLQRIQDNAVVDSPTEELSEQAARNRKSNVKIEYT 522
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 25.0 bits (52), Expect = 8.1
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = +2
Query: 362 D*GLLGASSADAGVQXWPGEVHPSCQNFDPAKAYSCP 472
D GLLGA+S GVQ PG P P + P
Sbjct: 1521 DYGLLGAASPYKGVQS-PGYTSPFSSAMSPGYGLTSP 1556
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,359,707
Number of Sequences: 5004
Number of extensions: 46417
Number of successful extensions: 124
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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