Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_N18
         (582 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical pr...   239   1e-63
AC024867-3|AAK68601.2|  327|Caenorhabditis elegans Eukaryotic in...    28   4.2  
Z48795-7|CAA88731.1|  347|Caenorhabditis elegans Hypothetical pr...    27   7.4  
Z69661-4|CAA93491.1|  238|Caenorhabditis elegans Hypothetical pr...    27   9.7  
U00040-3|AAM22033.1|  638|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical
           protein F40F8.10 protein.
          Length = 189

 Score =  239 bits (584), Expect = 1e-63
 Identities = 119/166 (71%), Positives = 138/166 (83%)
 Frame = +3

Query: 69  RVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTL 248
           R+ +V SK   +PRRPFEK RLDQELK+IG +GL+NKREVWRVKYTLA++RKAARELLTL
Sbjct: 3   RLKTVQSKVTKSPRRPFEKERLDQELKLIGTFGLKNKREVWRVKYTLAKVRKAARELLTL 62

Query: 249 EEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRXQTQVFKXGLAKSI 428
           E+KDPKRLFEGNALLRRLV+IGVLDE +MKLDYVLGLK+EDFLERR QTQVFK GLAKSI
Sbjct: 63  EDKDPKRLFEGNALLRRLVKIGVLDETKMKLDYVLGLKVEDFLERRLQTQVFKLGLAKSI 122

Query: 429 HHARILIRQRHIRVRKASCEHPIHLLCRPGTLGKHMDFSS*NLPFG 566
           HHARILI+Q HIRVR+   + P  ++       KH+DFS    P+G
Sbjct: 123 HHARILIKQHHIRVRRQVVDVPSFIVRLDSQ--KHIDFSL-QSPYG 165


>AC024867-3|AAK68601.2|  327|Caenorhabditis elegans Eukaryotic
           initiation factor protein3.I protein.
          Length = 327

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = -1

Query: 387 DDAPRSPQSSDQAHNRVSSVFHPVLQYEPDDVEGHY--LRTISWGPS 253
           +DA +  Q+S  A +  + ++H V + E    +GH+  + T++W PS
Sbjct: 252 EDAMQVTQTSVSAGHFEAKIYHMVFEEEFARFKGHFGPINTMAWHPS 298


>Z48795-7|CAA88731.1|  347|Caenorhabditis elegans Hypothetical
           protein R05H5.1 protein.
          Length = 347

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 103 VTYVFENTDGTLLFTILASSH 41
           + YVF+N+D  LLF IL   H
Sbjct: 160 LVYVFDNSDSDLLFQILTRVH 180


>Z69661-4|CAA93491.1|  238|Caenorhabditis elegans Hypothetical
           protein F48F7.6 protein.
          Length = 238

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +3

Query: 357 LKIEDFLERRXQTQVFKXGLAKSIHHARILIRQRHIRVRKASCEHPI-HLLCRPGTLGKH 533
           LK+E++LE+  + +         I  ARI+   + + + +   E  + H+L + G   + 
Sbjct: 115 LKVEEYLEKYLEIKTRNRMEQLDIVQARIVREMKAVAIAQGKSEEEVEHILAKQGRKARR 174

Query: 534 MDFS 545
           M  S
Sbjct: 175 MQRS 178


>U00040-3|AAM22033.1|  638|Caenorhabditis elegans Hypothetical
           protein C18H2.3 protein.
          Length = 638

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
 Frame = +3

Query: 60  VNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKRE-VWRVKYTLARIRKAARE 236
           +N+    + +K  +T R+ FEK+     ++   E  LRN  E VW     L  ++K  +E
Sbjct: 119 LNHFANEILNKDLMTQRQIFEKSATINGIRDAAEI-LRNVFEKVWNQLMKLNSVKKDFKE 177

Query: 237 LLTLEEKDPKRLFEGNALLRR---LVRIGVLDEKQMKLDYVLGL 359
            +   +    R+++ N +  +       GV+ E +   D + GL
Sbjct: 178 AVENSKHLTDRIYDLNFVRYQGELHAASGVIQEVKAYFDEIFGL 221


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,296,360
Number of Sequences: 27780
Number of extensions: 275028
Number of successful extensions: 793
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)