Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_N16
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC23B6.02c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    28   1.3  
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    27   3.1  
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc...    26   5.4  
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    25   7.2  

>SPCC23B6.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 139

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -2

Query: 209 SVIKYDKLTKERKKNFFTFIY-FVSVYTHFHGFFSFHLC 96
           S+ K +KL   R++  F  +Y +++    + GFFS+ LC
Sbjct: 96  SLQKQEKLKAPRRRISFNRVYVYINFSMGYRGFFSWFLC 134


>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = -3

Query: 496 SRKHEAVH--SEPLDDRIDYRLSIAQHNL 416
           SR+ E +   SEP+DD +D+   I Q+NL
Sbjct: 132 SRRAEIIKGVSEPVDDELDHEEEIFQNNL 160


>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
           Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1062

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +2

Query: 545 SSYNMMDSGGTGVAESPPTYHRTYEQYVQGAVENS 649
           SSY+M +S  T +AESP   H  ++   QG ++ S
Sbjct: 308 SSYHMPESPKTPIAESPD--HDNWDNEFQGTLKIS 340


>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 533 NMAFSSYNMMDSGGTGVAESPPTY-HRTYEQYVQGAVEN 646
           N++ S+Y+M    G   +++     H TYEQ++QG  +N
Sbjct: 30  NLSLSNYDMDSFLGQFPSDNNMQLPHSTYEQHLQGEQQN 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,552,922
Number of Sequences: 5004
Number of extensions: 49583
Number of successful extensions: 119
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)