Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_N16
         (651 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0980 + 7754841-7754971,7757048-7757330,7757435-7757640,775...    31   0.80 
08_02_1544 + 27787089-27787172,27787448-27787612,27787741-277878...    29   4.2  
09_02_0569 - 10752756-10753164,10753229-10753644,10754149-107553...    28   7.4  

>01_01_0980 +
           7754841-7754971,7757048-7757330,7757435-7757640,
           7757687-7757879,7758912-7759104,7759555-7759589
          Length = 346

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = +1

Query: 490 YDCRRGGRSALCGYKYGVFIL*HDGLGRHRGSGIAADIPPHLRAIRPRSRREQR 651
           +DC RG  SA+CG+ +G   L     G H G  +     P  R+ +P+   ++R
Sbjct: 292 FDCARGFSSAVCGHHHGHTWLRVCLHGGHHGGLVVDTYGPECRSGQPQYGHKKR 345


>08_02_1544 +
           27787089-27787172,27787448-27787612,27787741-27787850,
           27788360-27788513,27788643-27788937,27788996-27789798
          Length = 536

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +3

Query: 6   PSCTADGVVSRCPCRPYVLHTHRYQRVPFKTQMK-RKKTVKVC 131
           P C  D +    P    +LH  R QR P++ +M+  KK   VC
Sbjct: 54  PFCRPDNLTESAPTLWQLLHGDRQQRSPYQFEMRVPKKCQIVC 96


>09_02_0569 -
           10752756-10753164,10753229-10753644,10754149-10755349,
           10756770-10756991,10757615-10757767,10757883-10758034,
           10758142-10758222,10758353-10758598,10759394-10759516
          Length = 1000

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = -2

Query: 203 IKYDKLTKERKKNFFTFIYFVSVYTH 126
           I YD L  ER K  F F  F S  TH
Sbjct: 702 ISYDNLPDERTKQCFLFFAFASYGTH 727


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,792,239
Number of Sequences: 37544
Number of extensions: 321535
Number of successful extensions: 793
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)