Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_N16
         (651 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038605-6|AAB92018.2|  247|Caenorhabditis elegans Hypothetical ...    30   1.6  
Z72508-2|CAA96635.1|  284|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical pr...    28   5.0  

>AF038605-6|AAB92018.2|  247|Caenorhabditis elegans Hypothetical
           protein C02B10.3 protein.
          Length = 247

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 5/58 (8%)
 Frame = +1

Query: 379 RHNDACETNELIINCVVQSIVDNRFCHRV-----VLNEQPHAYDCRRGGRSALCGYKY 537
           +HN      +  I C+     D RFC R+      ++ Q H Y  R  G   +CG  Y
Sbjct: 124 QHNGTIAVGKKEIECICPPPWDGRFCERLACWRKTISTQQHRY--RNNGDHCICGNHY 179


>Z72508-2|CAA96635.1|  284|Caenorhabditis elegans Hypothetical
           protein F28H7.2 protein.
          Length = 284

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 569 GGTGVAESPPTYHRTYEQYVQGAVE 643
           G +GV +S  TYH+T+E  VQ  +E
Sbjct: 103 GKSGVNQSIDTYHKTFELNVQSVIE 127


>Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical
           protein F54F3.1 protein.
          Length = 1584

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +1

Query: 382 HNDACETNELIINCVVQ--SIVDNRFCHRVVLNEQPHA 489
           H   C  ++ + NC  +  ++ D R C R +  E+PHA
Sbjct: 256 HPADCPKDKFVDNCPAECRTVRDERGCERCICAERPHA 293


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,614,104
Number of Sequences: 27780
Number of extensions: 293563
Number of successful extensions: 794
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)