Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_N16
         (651 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    25   0.84 
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              24   1.1  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.5  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.5  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   5.9  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   5.9  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 349 HSDVTYNV*SRHNDACETNELIINCV 426
           +SD+T+N+  R      T  LII CV
Sbjct: 236 YSDITFNITMRRKTLFYTVNLIIPCV 261


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -3

Query: 550 R*KRHICIHTGLIVHHAGSRK-HEAVHSEPLDDRID 446
           R ++ I + T  ++  A  +K H A+  EP+D + D
Sbjct: 610 RNQKDIDVKTVQVIEDAAQKKKHRAIRPEPIDAQFD 645


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/52 (21%), Positives = 23/52 (44%)
 Frame = +2

Query: 443 IIDSVIEWF*MNSLMLTTAGVVDDQPCVDTNMAFSSYNMMDSGGTGVAESPP 598
           ++D +  W    ++++ TAG++   P +  +         + G T V   PP
Sbjct: 517 VLDRLFLWIFTLAVLVGTAGIILQAPTLYDDRVPIDKKFNEFGTTAVVNCPP 568


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/52 (21%), Positives = 23/52 (44%)
 Frame = +2

Query: 443 IIDSVIEWF*MNSLMLTTAGVVDDQPCVDTNMAFSSYNMMDSGGTGVAESPP 598
           ++D +  W    ++++ TAG++   P +  +         + G T V   PP
Sbjct: 517 VLDRLFLWIFTLAVLVGTAGIILQAPTLYDDRVPIDKKFNEFGTTAVVNCPP 568


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = +1

Query: 520  LCGYKYGVFIL*HDGLG 570
            LCG +Y +++  ++G+G
Sbjct: 1428 LCGSRYQIYVTAYNGIG 1444


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 26  CSITLPVPTVCSSYASLS 79
           C+IT  +P VCS    L+
Sbjct: 232 CTITRVIPQVCSGNCKLN 249


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 26  CSITLPVPTVCSSYASLS 79
           C+IT  +P VCS    L+
Sbjct: 232 CTITRVIPQVCSGNCKLN 249


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,277
Number of Sequences: 438
Number of extensions: 3715
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)