Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_N11
         (652 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1247 + 35233756-35233785,35234902-35236107                       30   1.4  
01_06_1235 - 35602548-35602594,35603057-35603060,35603186-356032...    28   5.6  
01_06_1012 - 33806190-33807875,33807963-33808331                       27   9.8  

>02_05_1247 + 35233756-35233785,35234902-35236107
          Length = 411

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = -2

Query: 393 GFLAF*NIVNYLSYFSIIWQCHCFELRVNQLIIHNYFKRPLTSPFTQNQSRRCIISNNLR 214
           GFL+F N  +  + FS +  C C  +  + L+ H      L SPF       C IS+ ++
Sbjct: 12  GFLSFLNFFHNSTAFSNLIGC-CLFILPSYLVGHYIEHHHLVSPFIPENQYICCISSIIK 70

Query: 213 QG 208
            G
Sbjct: 71  PG 72


>01_06_1235 -
           35602548-35602594,35603057-35603060,35603186-35603290,
           35604274-35604589,35605898-35605968,35606076-35606270
          Length = 245

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 274 GSFEVVVNDKLIYSKLKTMALPDYGEVAQVV 366
           G+FEV  N +L++SKL     P   E+ +++
Sbjct: 184 GAFEVYCNGQLVFSKLSEQRFPSEFELRELI 214


>01_06_1012 - 33806190-33807875,33807963-33808331
          Length = 684

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +1

Query: 322 KTMALPDYGEVAQVVHDVSKGQEPREIKGEQ 414
           + MALPD    A +V +V+    PR++KG++
Sbjct: 564 REMALPDERAAAAMVLEVNAEIAPRDVKGDR 594


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,947,853
Number of Sequences: 37544
Number of extensions: 276531
Number of successful extensions: 541
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)