Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP08_F_N11
(652 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC006006-1|AAH06006.1| 115|Homo sapiens chromosome 17 open read... 53 1e-06
AY508814-1|AAR92035.1| 115|Homo sapiens C35 protein protein. 53 1e-06
AF490253-1|AAO85461.1| 115|Homo sapiens XTP4 protein. 53 1e-06
U67171-1|AAC51665.1| 87|Homo sapiens selenoprotein W protein. 41 0.004
BC047893-1|AAH47893.2| 87|Homo sapiens selenoprotein W, 1 prot... 41 0.004
BC039597-1|AAH39597.1| 87|Homo sapiens selenoprotein W, 1 prot... 41 0.004
BC032546-1|AAH32546.1| 87|Homo sapiens selenoprotein W, 1 prot... 41 0.004
BC000581-1|AAH00581.1| 87|Homo sapiens selenoprotein W, 1 prot... 41 0.004
AF247455-1|AAL00898.1| 87|Homo sapiens selenoprotein W protein. 41 0.004
AF015283-1|AAB69859.1| 87|Homo sapiens selenoprotein W protein. 41 0.004
BC026179-1|AAH26179.1| 418|Homo sapiens SEC61A2 protein protein. 31 3.6
AK022640-1|BAB14148.1| 437|Homo sapiens protein ( Homo sapiens ... 31 3.6
AK022027-1|BAB13955.1| 234|Homo sapiens protein ( Homo sapiens ... 31 3.6
AK001440-1|BAA91692.1| 234|Homo sapiens protein ( Homo sapiens ... 31 3.6
AF346603-1|AAK29084.1| 476|Homo sapiens Sec61 alpha form 2 prot... 31 3.6
CR457154-1|CAG33435.1| 137|Homo sapiens SELT protein. 31 4.7
BC071699-1|AAH71699.1| 195|Homo sapiens selenoprotein T protein. 31 4.7
BC036738-1|AAH36738.3| 195|Homo sapiens selenoprotein T protein. 31 4.7
BC026350-1|AAH26350.2| 195|Homo sapiens selenoprotein T protein. 31 4.7
BC009611-1|AAH09611.2| 195|Homo sapiens selenoprotein T protein. 31 4.7
BC009556-1|AAH09556.2| 195|Homo sapiens selenoprotein T protein. 31 4.7
BC008411-1|AAH08411.2| 195|Homo sapiens selenoprotein T protein. 31 4.7
BC006012-1|AAH06012.2| 195|Homo sapiens selenoprotein T protein. 31 4.7
AY358096-1|AAQ88463.1| 137|Homo sapiens SELT protein. 31 4.7
AY358095-1|AAQ88462.1| 137|Homo sapiens SELT protein. 31 4.7
AF195141-1|AAF13696.1| 163|Homo sapiens selenoprotein T protein. 31 4.7
AF131856-1|AAD20063.1| 137|Homo sapiens Unknown protein. 31 4.7
>BC006006-1|AAH06006.1| 115|Homo sapiens chromosome 17 open reading
frame 37 protein.
Length = 115
Score = 52.8 bits (121), Expect = 1e-06
Identities = 23/87 (26%), Positives = 44/87 (50%)
Frame = +1
Query: 157 KVHVEYCGACDYGGHCLALAQIIRNDTPSALVLCKRGRQGSFEVVVNDKLIYSKLKTMAL 336
++ VEYC C + L LA ++ P + + G G+FE+ +N +L++SKL+
Sbjct: 24 RIVVEYCEPCGFEATYLELASAVKEQYPGIEIESRLGGTGAFEIEINGQLVFSKLENGGF 83
Query: 337 PDYGEVAQVVHDVSKGQEPREIKGEQP 417
P ++ + + S G+ +I +P
Sbjct: 84 PYEKDLIEAIRRASNGETLEKITNSRP 110
>AY508814-1|AAR92035.1| 115|Homo sapiens C35 protein protein.
Length = 115
Score = 52.8 bits (121), Expect = 1e-06
Identities = 23/87 (26%), Positives = 44/87 (50%)
Frame = +1
Query: 157 KVHVEYCGACDYGGHCLALAQIIRNDTPSALVLCKRGRQGSFEVVVNDKLIYSKLKTMAL 336
++ VEYC C + L LA ++ P + + G G+FE+ +N +L++SKL+
Sbjct: 24 RIVVEYCEPCGFEATYLELASAVKEQYPGIEIESRLGGTGAFEIEINGQLVFSKLENGGF 83
Query: 337 PDYGEVAQVVHDVSKGQEPREIKGEQP 417
P ++ + + S G+ +I +P
Sbjct: 84 PYEKDLIEAIRRASNGETLEKITNSRP 110
>AF490253-1|AAO85461.1| 115|Homo sapiens XTP4 protein.
Length = 115
Score = 52.8 bits (121), Expect = 1e-06
Identities = 23/87 (26%), Positives = 44/87 (50%)
Frame = +1
Query: 157 KVHVEYCGACDYGGHCLALAQIIRNDTPSALVLCKRGRQGSFEVVVNDKLIYSKLKTMAL 336
++ VEYC C + L LA ++ P + + G G+FE+ +N +L++SKL+
Sbjct: 24 RIVVEYCEPCGFEATYLELASAVKEQYPGIEIESRLGGTGAFEIEINGQLVFSKLENGGF 83
Query: 337 PDYGEVAQVVHDVSKGQEPREIKGEQP 417
P ++ + + S G+ +I +P
Sbjct: 84 PYEKDLIEAIRRASNGETLEKITNSRP 110
>U67171-1|AAC51665.1| 87|Homo sapiens selenoprotein W protein.
Length = 87
Score = 40.7 bits (91), Expect = 0.004
Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = +1
Query: 160 VHVEYCGACDYGGHCLALAQIIRNDTPSALVLCKRGRQ---GSFEVVVNDKLIYSKLK 324
V V YCGA Y L L + + ++ P L +C G G FEV+V KLI+SK K
Sbjct: 5 VRVVYCGAUGYKSKYLQLKKKLEDEFPGRLDICGEGTPQATGFFEVMVAGKLIHSKKK 62
>BC047893-1|AAH47893.2| 87|Homo sapiens selenoprotein W, 1
protein.
Length = 87
Score = 40.7 bits (91), Expect = 0.004
Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = +1
Query: 160 VHVEYCGACDYGGHCLALAQIIRNDTPSALVLCKRGRQ---GSFEVVVNDKLIYSKLK 324
V V YCGA Y L L + + ++ P L +C G G FEV+V KLI+SK K
Sbjct: 5 VRVVYCGAUGYKSKYLQLKKKLEDEFPGRLDICGEGTPQATGFFEVMVAGKLIHSKKK 62
>BC039597-1|AAH39597.1| 87|Homo sapiens selenoprotein W, 1
protein.
Length = 87
Score = 40.7 bits (91), Expect = 0.004
Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = +1
Query: 160 VHVEYCGACDYGGHCLALAQIIRNDTPSALVLCKRGRQ---GSFEVVVNDKLIYSKLK 324
V V YCGA Y L L + + ++ P L +C G G FEV+V KLI+SK K
Sbjct: 5 VRVVYCGAUGYKSKYLQLKKKLEDEFPGRLDICGEGTPQATGFFEVMVAGKLIHSKKK 62
>BC032546-1|AAH32546.1| 87|Homo sapiens selenoprotein W, 1
protein.
Length = 87
Score = 40.7 bits (91), Expect = 0.004
Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = +1
Query: 160 VHVEYCGACDYGGHCLALAQIIRNDTPSALVLCKRGRQ---GSFEVVVNDKLIYSKLK 324
V V YCGA Y L L + + ++ P L +C G G FEV+V KLI+SK K
Sbjct: 5 VRVVYCGAUGYKSKYLQLKKKLEDEFPGRLDICGEGTPQATGFFEVMVAGKLIHSKKK 62
>BC000581-1|AAH00581.1| 87|Homo sapiens selenoprotein W, 1
protein.
Length = 87
Score = 40.7 bits (91), Expect = 0.004
Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = +1
Query: 160 VHVEYCGACDYGGHCLALAQIIRNDTPSALVLCKRGRQ---GSFEVVVNDKLIYSKLK 324
V V YCGA Y L L + + ++ P L +C G G FEV+V KLI+SK K
Sbjct: 5 VRVVYCGAUGYKSKYLQLKKKLEDEFPGRLDICGEGTPQATGFFEVMVAGKLIHSKKK 62
>AF247455-1|AAL00898.1| 87|Homo sapiens selenoprotein W protein.
Length = 87
Score = 40.7 bits (91), Expect = 0.004
Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = +1
Query: 160 VHVEYCGACDYGGHCLALAQIIRNDTPSALVLCKRGRQ---GSFEVVVNDKLIYSKLK 324
V V YCGA Y L L + + ++ P L +C G G FEV+V KLI+SK K
Sbjct: 5 VRVVYCGAUGYKSKYLQLKKKLEDEFPGRLDICGEGTPQATGFFEVMVAGKLIHSKKK 62
>AF015283-1|AAB69859.1| 87|Homo sapiens selenoprotein W protein.
Length = 87
Score = 40.7 bits (91), Expect = 0.004
Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = +1
Query: 160 VHVEYCGACDYGGHCLALAQIIRNDTPSALVLCKRGRQ---GSFEVVVNDKLIYSKLK 324
V V YCGA Y L L + + ++ P L +C G G FEV+V KLI+SK K
Sbjct: 5 VRVVYCGAUGYKSKYLQLKKKLEDEFPGRLDICGEGTPQATGFFEVMVAGKLIHSKKK 62
>BC026179-1|AAH26179.1| 418|Homo sapiens SEC61A2 protein protein.
Length = 418
Score = 31.1 bits (67), Expect = 3.6
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = -3
Query: 623 YVVGARTNCPYKSAQYSGSLCAAVNLIKYEQTVQSIVSHFQKSNMYLTT*LFSIILAG 450
Y G R + P KSA+Y G + + Y + I+ SN+Y+ + + S+ +G
Sbjct: 257 YFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLSVRFSG 314
>AK022640-1|BAB14148.1| 437|Homo sapiens protein ( Homo sapiens
cDNA FLJ12578 fis, clone NT2RM4001054, moderately
similar to Homo sapiens sec61 homolog mRNA. ).
Length = 437
Score = 31.1 bits (67), Expect = 3.6
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = -3
Query: 623 YVVGARTNCPYKSAQYSGSLCAAVNLIKYEQTVQSIVSHFQKSNMYLTT*LFSIILAG 450
Y G R + P KSA+Y G + + Y + I+ SN+Y+ + + S+ +G
Sbjct: 257 YFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLSVRFSG 314
>AK022027-1|BAB13955.1| 234|Homo sapiens protein ( Homo sapiens
cDNA FLJ11965 fis, clone HEMBB1001112, moderately
similar to Homo sapiens sec61 homolog mRNA. ).
Length = 234
Score = 31.1 bits (67), Expect = 3.6
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = -3
Query: 623 YVVGARTNCPYKSAQYSGSLCAAVNLIKYEQTVQSIVSHFQKSNMYLTT*LFSIILAG 450
Y G R + P KSA+Y G + + Y + I+ SN+Y+ + + S+ +G
Sbjct: 15 YFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLSVRFSG 72
>AK001440-1|BAA91692.1| 234|Homo sapiens protein ( Homo sapiens
cDNA FLJ10578 fis, clone NT2RP2003433, highly similar to
PROTEIN TRANSPORT PROTEIN SEC61 ALPHA SUBUNIT. ).
Length = 234
Score = 31.1 bits (67), Expect = 3.6
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = -3
Query: 623 YVVGARTNCPYKSAQYSGSLCAAVNLIKYEQTVQSIVSHFQKSNMYLTT*LFSIILAG 450
Y G R + P KSA+Y G + + Y + I+ SN+Y+ + + S+ +G
Sbjct: 15 YFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLSVRFSG 72
>AF346603-1|AAK29084.1| 476|Homo sapiens Sec61 alpha form 2
protein.
Length = 476
Score = 31.1 bits (67), Expect = 3.6
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = -3
Query: 623 YVVGARTNCPYKSAQYSGSLCAAVNLIKYEQTVQSIVSHFQKSNMYLTT*LFSIILAG 450
Y G R + P KSA+Y G + + Y + I+ SN+Y+ + + S+ +G
Sbjct: 257 YFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLSVRFSG 314
>CR457154-1|CAG33435.1| 137|Homo sapiens SELT protein.
Length = 137
Score = 30.7 bits (66), Expect = 4.7
Identities = 12/36 (33%), Positives = 24/36 (66%)
Frame = +1
Query: 274 GSFEVVVNDKLIYSKLKTMALPDYGEVAQVVHDVSK 381
G+FE+ +ND ++SKL++ LP ++ Q++ + K
Sbjct: 89 GAFEITLNDVPVWSKLESGHLPSMQQLVQILDNEMK 124
>BC071699-1|AAH71699.1| 195|Homo sapiens selenoprotein T protein.
Length = 195
Score = 30.7 bits (66), Expect = 4.7
Identities = 12/36 (33%), Positives = 24/36 (66%)
Frame = +1
Query: 274 GSFEVVVNDKLIYSKLKTMALPDYGEVAQVVHDVSK 381
G+FE+ +ND ++SKL++ LP ++ Q++ + K
Sbjct: 147 GAFEITLNDVPVWSKLESGHLPSMQQLVQILDNEMK 182
>BC036738-1|AAH36738.3| 195|Homo sapiens selenoprotein T protein.
Length = 195
Score = 30.7 bits (66), Expect = 4.7
Identities = 12/36 (33%), Positives = 24/36 (66%)
Frame = +1
Query: 274 GSFEVVVNDKLIYSKLKTMALPDYGEVAQVVHDVSK 381
G+FE+ +ND ++SKL++ LP ++ Q++ + K
Sbjct: 147 GAFEITLNDVPVWSKLESGHLPSMQQLVQILDNEMK 182
>BC026350-1|AAH26350.2| 195|Homo sapiens selenoprotein T protein.
Length = 195
Score = 30.7 bits (66), Expect = 4.7
Identities = 12/36 (33%), Positives = 24/36 (66%)
Frame = +1
Query: 274 GSFEVVVNDKLIYSKLKTMALPDYGEVAQVVHDVSK 381
G+FE+ +ND ++SKL++ LP ++ Q++ + K
Sbjct: 147 GAFEITLNDVPVWSKLESGHLPSMQQLVQILDNEMK 182
>BC009611-1|AAH09611.2| 195|Homo sapiens selenoprotein T protein.
Length = 195
Score = 30.7 bits (66), Expect = 4.7
Identities = 12/36 (33%), Positives = 24/36 (66%)
Frame = +1
Query: 274 GSFEVVVNDKLIYSKLKTMALPDYGEVAQVVHDVSK 381
G+FE+ +ND ++SKL++ LP ++ Q++ + K
Sbjct: 147 GAFEITLNDVPVWSKLESGHLPSMQQLVQILDNEMK 182
>BC009556-1|AAH09556.2| 195|Homo sapiens selenoprotein T protein.
Length = 195
Score = 30.7 bits (66), Expect = 4.7
Identities = 12/36 (33%), Positives = 24/36 (66%)
Frame = +1
Query: 274 GSFEVVVNDKLIYSKLKTMALPDYGEVAQVVHDVSK 381
G+FE+ +ND ++SKL++ LP ++ Q++ + K
Sbjct: 147 GAFEITLNDVPVWSKLESGHLPSMQQLVQILDNEMK 182
>BC008411-1|AAH08411.2| 195|Homo sapiens selenoprotein T protein.
Length = 195
Score = 30.7 bits (66), Expect = 4.7
Identities = 12/36 (33%), Positives = 24/36 (66%)
Frame = +1
Query: 274 GSFEVVVNDKLIYSKLKTMALPDYGEVAQVVHDVSK 381
G+FE+ +ND ++SKL++ LP ++ Q++ + K
Sbjct: 147 GAFEITLNDVPVWSKLESGHLPSMQQLVQILDNEMK 182
>BC006012-1|AAH06012.2| 195|Homo sapiens selenoprotein T protein.
Length = 195
Score = 30.7 bits (66), Expect = 4.7
Identities = 12/36 (33%), Positives = 24/36 (66%)
Frame = +1
Query: 274 GSFEVVVNDKLIYSKLKTMALPDYGEVAQVVHDVSK 381
G+FE+ +ND ++SKL++ LP ++ Q++ + K
Sbjct: 147 GAFEITLNDVPVWSKLESGHLPSMQQLVQILDNEMK 182
>AY358096-1|AAQ88463.1| 137|Homo sapiens SELT protein.
Length = 137
Score = 30.7 bits (66), Expect = 4.7
Identities = 12/36 (33%), Positives = 24/36 (66%)
Frame = +1
Query: 274 GSFEVVVNDKLIYSKLKTMALPDYGEVAQVVHDVSK 381
G+FE+ +ND ++SKL++ LP ++ Q++ + K
Sbjct: 89 GAFEITLNDVPVWSKLESGHLPSMQQLVQILDNEMK 124
>AY358095-1|AAQ88462.1| 137|Homo sapiens SELT protein.
Length = 137
Score = 30.7 bits (66), Expect = 4.7
Identities = 12/36 (33%), Positives = 24/36 (66%)
Frame = +1
Query: 274 GSFEVVVNDKLIYSKLKTMALPDYGEVAQVVHDVSK 381
G+FE+ +ND ++SKL++ LP ++ Q++ + K
Sbjct: 89 GAFEITLNDVPVWSKLESGHLPSMQQLVQILDNEMK 124
>AF195141-1|AAF13696.1| 163|Homo sapiens selenoprotein T protein.
Length = 163
Score = 30.7 bits (66), Expect = 4.7
Identities = 12/36 (33%), Positives = 24/36 (66%)
Frame = +1
Query: 274 GSFEVVVNDKLIYSKLKTMALPDYGEVAQVVHDVSK 381
G+FE+ +ND ++SKL++ LP ++ Q++ + K
Sbjct: 115 GAFEITLNDVPVWSKLESGHLPSMQQLVQILDNEMK 150
>AF131856-1|AAD20063.1| 137|Homo sapiens Unknown protein.
Length = 137
Score = 30.7 bits (66), Expect = 4.7
Identities = 12/36 (33%), Positives = 24/36 (66%)
Frame = +1
Query: 274 GSFEVVVNDKLIYSKLKTMALPDYGEVAQVVHDVSK 381
G+FE+ +ND ++SKL++ LP ++ Q++ + K
Sbjct: 89 GAFEITLNDVPVWSKLESGHLPSMQQLVQILDNEMK 124
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,418,482
Number of Sequences: 237096
Number of extensions: 1599946
Number of successful extensions: 2582
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 2551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2582
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7253890590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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