Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_N11
         (652 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025721-7|AAK29911.3|  668|Caenorhabditis elegans Half transpor...    28   5.0  
Z99281-10|CAB16516.1|  473|Caenorhabditis elegans Hypothetical p...    27   8.7  
AC006641-1|AAF39824.2|  376|Caenorhabditis elegans Hypothetical ...    27   8.7  

>AC025721-7|AAK29911.3|  668|Caenorhabditis elegans Half transporter
           (pgp related)protein 6 protein.
          Length = 668

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
 Frame = -3

Query: 617 VGARTNCPYKSAQYSGSLCAAVNLIKYEQTVQSIVSHFQKS---NMYLTT*LFSIILAG* 447
           + AR N   +  + S  LC +  L  + QT+  I S +  S    MY    +  IILAG 
Sbjct: 204 LSARLNADVQEFKSSFKLCVSQGLRTFAQTIGCIGSLYFLSPTMTMYTVAVVPGIILAGS 263

Query: 446 SINQDIAQL 420
           +I   + QL
Sbjct: 264 AIGAGLRQL 272


>Z99281-10|CAB16516.1|  473|Caenorhabditis elegans Hypothetical
           protein Y57G11C.15 protein.
          Length = 473

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -3

Query: 623 YVVGARTNCPYKSAQYSGSLCAAVNLIKYEQTVQSIVSHFQKSNMYL 483
           Y  G R + P KSA+Y G   +    + Y   +  I+     SN+Y+
Sbjct: 257 YFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYV 303


>AC006641-1|AAF39824.2|  376|Caenorhabditis elegans Hypothetical
           protein F45D11.10 protein.
          Length = 376

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -2

Query: 375 NIVNYLSYFSI-IWQCHCFELRVNQLIIHNYFKRPLTS 265
           N + + +YFS  +W     +LR+ +L +HN  K+ L++
Sbjct: 179 NRMEFKNYFSRQVWDLRNVKLRIKKLEVHNEIKQVLST 216


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,716,400
Number of Sequences: 27780
Number of extensions: 272493
Number of successful extensions: 632
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)