Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_N11
         (652 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   4.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   4.5  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   7.8  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   7.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   7.8  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
 Frame = -3

Query: 605  TNCPYKSAQYSGSLCAAVNLIKYEQTVQSIVSHFQKSNMYLTT--*LFSIILAG*SINQD 432
            TN P K A   G    AV     +  +QS   HF    + ++T   L +I L+G S+   
Sbjct: 885  TNTPAKKATNIGGKPVAVVKSSAQSLLQSNQQHFPHHQIQVSTSAGLQTIRLSGHSVLHS 944

Query: 431  IAQLIGCS 408
               ++  S
Sbjct: 945  AQSVVASS 952


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -2

Query: 300 IIHNYFKRPLTSPFTQNQS 244
           IIHNY  R   SP + N S
Sbjct: 726 IIHNYIMRGEASPRSPNAS 744


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +2

Query: 221 LLEMIHLLLW 250
           LL+MIHL+ W
Sbjct: 13  LLQMIHLIAW 22


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 119 LTHSYFLLQPLVYYFRI 69
           +THSYF+  PL   + I
Sbjct: 230 ITHSYFMPDPLAGDYNI 246


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/28 (32%), Positives = 10/28 (35%)
 Frame = +1

Query: 184 CDYGGHCLALAQIIRNDTPSALVLCKRG 267
           C Y  HC AL      D     + C  G
Sbjct: 737 CRYEAHCFALCHCCDFDACDCEMTCPAG 764


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,813
Number of Sequences: 438
Number of extensions: 3265
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)