Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_N10
         (490 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_02_0115 - 11248021-11248101,11249017-11249118                       84   5e-17
05_03_0661 - 16726958-16726966,16727133-16727234                       57   9e-09
08_01_0682 + 5974622-5974745,5976182-5976371,5976953-5977024,597...    30   0.87 
05_07_0185 - 28257291-28257616,28258202-28258469,28258580-28260061     28   3.5  
06_03_0336 + 19671500-19672150,19672681-19673301                       27   6.1  

>01_02_0115 - 11248021-11248101,11249017-11249118
          Length = 60

 Score = 84.2 bits (199), Expect = 5e-17
 Identities = 37/52 (71%), Positives = 43/52 (82%)
 Frame = +3

Query: 183 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLK 338
           MAKSKNHT HNQ+ KAH+NGIKKP++ R  ST GMDPKFLRNQR+ +K N K
Sbjct: 1   MAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNQRYSRKHNKK 52


>05_03_0661 - 16726958-16726966,16727133-16727234
          Length = 36

 Score = 56.8 bits (131), Expect = 9e-09
 Identities = 24/36 (66%), Positives = 29/36 (80%)
 Frame = +3

Query: 183 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMD 290
           MAKSKNHT HNQ+ KAH+NGIKKP++ R  ST G +
Sbjct: 1   MAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGFE 36


>08_01_0682 +
           5974622-5974745,5976182-5976371,5976953-5977024,
           5977482-5977553,5977688-5977759,5977842-5977913,
           5978690-5978761,5978855-5978926,5979017-5979091,
           5979529-5979594,5979821-5979885,5979975-5980354,
           5980438-5980636,5980713-5980763,5980955-5981073,
           5981190-5981400,5981524-5981755,5981842-5981992,
           5982089-5982447,5982750-5982768
          Length = 890

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = +1

Query: 121 RCVGIYSNDFIFLYRIENSSKWQSQRIIQIITKTAKL-TEMVSKSQGRPGTNPPLAW 288
           RC G +    + LY +  +  W +    Q   +T  +    ++   GR GTNPP  W
Sbjct: 4   RCSGSHGRQLLLLYWLVIACSWVAAAQAQQAPRTDPVEVAALNAILGRWGTNPPKTW 60


>05_07_0185 - 28257291-28257616,28258202-28258469,28258580-28260061
          Length = 691

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +3

Query: 246 KKPRKTRHESTLGMDPKFLRNQ-RFCKKG 329
           +KP K R    L +  +F+R+Q + CKKG
Sbjct: 454 RKPTKPRQRGKLKLQSQFIRDQNKICKKG 482


>06_03_0336 + 19671500-19672150,19672681-19673301
          Length = 423

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +2

Query: 281 WHGSKIFKESKVLQEG*PEASQATREGG 364
           WH    FK S+    G PEA+ A  EGG
Sbjct: 223 WHEINQFKSSEKSLVGMPEAAAAEEEGG 250


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,513,840
Number of Sequences: 37544
Number of extensions: 165778
Number of successful extensions: 446
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)