Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP08_F_N03
(638 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 37 0.003
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 28 0.99
SPAC1002.16c |||nicotinic acid plasma membrane transporter |Schi... 27 3.0
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 26 4.0
SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex ... 25 7.0
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|... 25 9.2
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz... 25 9.2
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ... 25 9.2
SPAC19B12.11c |||zinc finger protein|Schizosaccharomyces pombe|c... 25 9.2
SPCC663.06c |||short chain dehydrogenase |Schizosaccharomyces po... 25 9.2
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 36.7 bits (81), Expect = 0.003
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 203 PWCWYCNREFDDEKILIQHQKAKHFKCHIC 292
P C +CN F D+ L +H + KH +C+IC
Sbjct: 245 PKCEFCNTHFYDDDELFKHCREKHERCYIC 274
Score = 25.0 bits (52), Expect = 9.2
Identities = 9/26 (34%), Positives = 12/26 (46%)
Frame = +2
Query: 272 HFKCHICHKKLYTGPGLSIHCMQVHK 349
H KC C+ Y L HC + H+
Sbjct: 244 HPKCEFCNTHFYDDDELFKHCREKHE 269
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 28.3 bits (60), Expect = 0.99
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -1
Query: 275 NASLSDVG*ESFRRQTPCYNTSTKVWMPSSSSY 177
N SL +V F++QTP YN + KV + SS +
Sbjct: 819 NYSLENVVLNIFKKQTPYYNQADKVHLWQSSRF 851
>SPAC1002.16c |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 499
Score = 26.6 bits (56), Expect = 3.0
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +2
Query: 272 HFKCHICHKKLYTGPGLSI 328
+F C++C +YTG GL++
Sbjct: 380 YFACYLCSVGVYTGAGLNV 398
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 26.2 bits (55), Expect = 4.0
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Frame = +2
Query: 206 WCWY--CNREFDDEKILIQHQKA----KHFKCHICHKKLYTGPGLSIHCMQVH 346
+C Y C + F ++ L +H++ K F C C++ L+ H Q+H
Sbjct: 27 YCTYPDCPKSFTRKEHLRRHERTHENVKAFSCSFCNRAFARSDVLNRHVQQMH 79
>SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex
subunit |Schizosaccharomyces pombe|chr 2|||Manual
Length = 509
Score = 25.4 bits (53), Expect = 7.0
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +2
Query: 509 LPRKKLLQHCWVQALRQCHLGYCPHP 586
L K + C V LR+C LG C P
Sbjct: 140 LAENKHITECAVATLRECGLGACGPP 165
>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
1|||Manual
Length = 927
Score = 25.0 bits (52), Expect = 9.2
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +2
Query: 329 HCMQVHKEAIDKVPNSLPNRSN 394
H VHKE++ K+ +L +R+N
Sbjct: 119 HKTDVHKESVSKLSKNLESRNN 140
>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 900
Score = 25.0 bits (52), Expect = 9.2
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = +2
Query: 209 CWYCNRE-FDDEKILIQHQKAKHFKC 283
CW+CN+ F + +L Q A H C
Sbjct: 837 CWHCNQPLFSEPFVLFPCQHAFHRSC 862
>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 463
Score = 25.0 bits (52), Expect = 9.2
Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +2
Query: 260 QKAKHFK-CHICHKKLYTGPGLSIH-CMQVHKEAIDK 364
+KA+ ++ C +C+KK Y+ S H + H++ + K
Sbjct: 64 KKAEFYQNCEVCNKKFYSEGAYSSHMASKKHRDNLSK 100
>SPAC19B12.11c |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 124
Score = 25.0 bits (52), Expect = 9.2
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 206 WCWYCNREFDDEKILIQHQKAKHFK 280
+C C R FD + L+ H+K K K
Sbjct: 57 YCIECARYFDSSQALLVHKKGKVHK 81
>SPCC663.06c |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 253
Score = 25.0 bits (52), Expect = 9.2
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -2
Query: 352 FFMYLHAVYGQSRSCVQLFVTNVTFKMLRFLMLDENLFVVKL 227
FF + + YGQS++ + N T K + F + DE V+ +
Sbjct: 150 FFPFNQSGYGQSKAAL-----NFTMKEISFELQDEGFIVISI 186
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,500,266
Number of Sequences: 5004
Number of extensions: 46448
Number of successful extensions: 158
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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