Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_N03
         (638 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866...   147   6e-36
05_03_0281 + 11560402-11560569,11561373-11561579,11562966-115631...    37   0.016
01_01_1052 + 8297105-8297422,8298978-8299310,8299820-8301010           36   0.027
07_03_1165 - 24459156-24460139                                         34   0.11 
09_04_0210 + 15644151-15644609                                         30   1.3  
02_05_0473 + 29319824-29322511,29322659-29322820,29324133-293242...    30   1.8  
12_02_0397 + 18581301-18581561,18581584-18581676                       28   7.2  

>09_06_0277 -
           21983049-21983080,21983250-21984788,21986619-21986655,
           21987612-21987665,21987781-21987893,21988272-21988660,
           21988783-21988903,21989245-21989342,21989963-21990153
          Length = 857

 Score =  147 bits (357), Expect = 6e-36
 Identities = 59/87 (67%), Positives = 75/87 (86%)
 Frame = +2

Query: 173 MGRKKKKASKPWCWYCNREFDDEKILIQHQKAKHFKCHICHKKLYTGPGLSIHCMQVHKE 352
           MG+KKK+  K +C+YC+REFDDEKIL+QHQKAKHFKCH+CHKKL T  G++IH +QVHKE
Sbjct: 1   MGKKKKRVEKVFCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMAIHVLQVHKE 60

Query: 353 AIDKVPNSLPNRSNIEIEIYGMEGIPP 433
           ++ KVPN+ P R + EIEI+GM+GIPP
Sbjct: 61  SVTKVPNAKPERESTEIEIFGMQGIPP 87


>05_03_0281 +
           11560402-11560569,11561373-11561579,11562966-11563174,
           11563261-11563309,11563611-11563673,11563799-11565472
          Length = 789

 Score = 36.7 bits (81), Expect = 0.016
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 194 ASKPWCWYCNREFDDEKILIQHQKAKHFKCHICHKK 301
           A  P C +C   F  +  L  H   +H+ CHIC ++
Sbjct: 161 AGHPMCEFCRSSFYGDNELYTHMSREHYSCHICQRQ 196


>01_01_1052 + 8297105-8297422,8298978-8299310,8299820-8301010
          Length = 613

 Score = 35.9 bits (79), Expect = 0.027
 Identities = 16/48 (33%), Positives = 20/48 (41%)
 Frame = +2

Query: 203 PWCWYCNREFDDEKILIQHQKAKHFKCHICHKKLYTGPGLSIHCMQVH 346
           P C +C   F  +  L  H   +HF CHIC +       LS    Q H
Sbjct: 145 PMCEFCKSPFYGDNELYTHMTREHFSCHICQRYSARLQSLSYLVRQQH 192


>07_03_1165 - 24459156-24460139
          Length = 327

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +2

Query: 233 DDEKILIQHQKAKHFKCHICHKKLYTGPGLSIHCMQVHKEAIDKVPNSLP 382
           DD+   +  ++   F CH+C+K+  +   +  H M+VH    +K P SLP
Sbjct: 99  DDDAAPVAARREASFPCHLCNKEFGSRKAVHGH-MRVHHAENEKEPMSLP 147


>09_04_0210 + 15644151-15644609
          Length = 152

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +2

Query: 209 CWYCNREFDDEKILIQHQKAKHFKCHICHKKLYTGPGLSIH 331
           C YC+R+FD  + L  HQ A  ++  +  ++      L  H
Sbjct: 36  CMYCDRKFDSSQALGGHQNAHKYERSLAKRRREIAAALRAH 76


>02_05_0473 +
           29319824-29322511,29322659-29322820,29324133-29324249,
           29324360-29324469,29324504-29324540,29324696-29324862,
           29325002-29325089,29325163-29325270
          Length = 1158

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
 Frame = +2

Query: 227 EFDDEKILIQHQKAKH----FKCHICHKKLYTGPGLSIHCMQVHKEAI 358
           E  D  +++  +   H     KC IC ++     GL +H  +VHK+ +
Sbjct: 443 ENQDGSVMVLREDGTHPSPGLKCKICSQEFSDDQGLGLHWTEVHKKEV 490


>12_02_0397 + 18581301-18581561,18581584-18581676
          Length = 117

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -3

Query: 249 RIFSSSNSLLQYQHQGLDAFFFF 181
           R+F++ N+++Q QH  L A+F F
Sbjct: 86  RMFANINNMMQQQHDDLQAYFRF 108


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,466,125
Number of Sequences: 37544
Number of extensions: 312702
Number of successful extensions: 983
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 983
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)