Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP08_F_M24
(642 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75714-1|CAB00058.1| 194|Caenorhabditis elegans Hypothetical pr... 153 8e-38
Z70309-13|CAL36512.2| 383|Caenorhabditis elegans Hypothetical p... 29 3.7
Z70309-12|CAB54293.3| 413|Caenorhabditis elegans Hypothetical p... 29 3.7
Z70309-11|CAB54291.3| 408|Caenorhabditis elegans Hypothetical p... 29 3.7
U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical pr... 29 3.7
U23179-7|AAC46721.1| 782|Caenorhabditis elegans Hypothetical pr... 28 4.9
U70849-11|AAK29800.1| 897|Caenorhabditis elegans Hypothetical p... 28 6.5
U70849-10|AAK29799.1| 910|Caenorhabditis elegans Hypothetical p... 28 6.5
Z78420-2|CAB01710.3| 738|Caenorhabditis elegans Hypothetical pr... 27 8.6
AF036706-9|AAK39281.1| 681|Caenorhabditis elegans Hypothetical ... 27 8.6
AC024792-1|AAK84610.1| 938|Caenorhabditis elegans Importin beta... 27 8.6
>Z75714-1|CAB00058.1| 194|Caenorhabditis elegans Hypothetical
protein ZC434.2 protein.
Length = 194
Score = 153 bits (372), Expect = 8e-38
Identities = 72/130 (55%), Positives = 98/130 (75%), Gaps = 1/130 (0%)
Frame = +1
Query: 46 KIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMP 225
K++K+ G E +SQAL++LETN D+++QL+ELYI KE+EL NK +IIIYVP+P
Sbjct: 7 KLLKSDGKVVSEIEKQVSQALIDLETNDDVQSQLKELYIVGVKEVELGNKSAIIIYVPVP 66
Query: 226 KLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRV-ANKQKRPRSRTLTSVY 402
+LKAF KI LVRELEKKF G+ ++ + R+ILPKP ++ KQKRPRSRTLT+V+
Sbjct: 67 QLKAFHKIHPALVRELEKKFGGRDILILAKRRILPKPQRGSKARPQKQKRPRSRTLTAVH 126
Query: 403 DAILEDLVFP 432
DA L++LV+P
Sbjct: 127 DAWLDELVYP 136
Score = 89.0 bits (211), Expect = 2e-18
Identities = 37/56 (66%), Positives = 48/56 (85%)
Frame = +2
Query: 434 AEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFPEP 601
AE+VG+RIRVKLDG ++ KVHLDK+ QT + HK+ F SVY+KLTG++VTFEFP+P
Sbjct: 137 AEVVGRRIRVKLDGKKVYKVHLDKSHQTNVGHKIGVFASVYRKLTGKDVTFEFPDP 192
>Z70309-13|CAL36512.2| 383|Caenorhabditis elegans Hypothetical
protein R102.4c protein.
Length = 383
Score = 28.7 bits (61), Expect = 3.7
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Frame = +2
Query: 317 VRSCLSPATKLVLLTNKRGHAQGH*PLCTMLSSRTWSSLAEIVGKRIRVKLDGSQLIKVH 496
V+ C PA+KL+ + N + G + R+ LAE + ++V +DG+++
Sbjct: 157 VKDCHMPASKLICIENTHNYTGG--KALPIEWMRSVKQLAE--RRDLKVHMDGARIYNAA 212
Query: 497 LDKN-QQTTIEHKVDTFQSVYKKLTGREV 580
+ N + I DT Q + K G V
Sbjct: 213 VASNCSVSKIASFADTVQMCFSKGLGAPV 241
>Z70309-12|CAB54293.3| 413|Caenorhabditis elegans Hypothetical
protein R102.4b protein.
Length = 413
Score = 28.7 bits (61), Expect = 3.7
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Frame = +2
Query: 317 VRSCLSPATKLVLLTNKRGHAQGH*PLCTMLSSRTWSSLAEIVGKRIRVKLDGSQLIKVH 496
V+ C PA+KL+ + N + G + R+ LAE + ++V +DG+++
Sbjct: 187 VKDCHMPASKLICIENTHNYTGG--KALPIEWMRSVKQLAE--RRDLKVHMDGARIYNAA 242
Query: 497 LDKN-QQTTIEHKVDTFQSVYKKLTGREV 580
+ N + I DT Q + K G V
Sbjct: 243 VASNCSVSKIASFADTVQMCFSKGLGAPV 271
>Z70309-11|CAB54291.3| 408|Caenorhabditis elegans Hypothetical
protein R102.4a protein.
Length = 408
Score = 28.7 bits (61), Expect = 3.7
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Frame = +2
Query: 317 VRSCLSPATKLVLLTNKRGHAQGH*PLCTMLSSRTWSSLAEIVGKRIRVKLDGSQLIKVH 496
V+ C PA+KL+ + N + G + R+ LAE + ++V +DG+++
Sbjct: 182 VKDCHMPASKLICIENTHNYTGG--KALPIEWMRSVKQLAE--RRDLKVHMDGARIYNAA 237
Query: 497 LDKN-QQTTIEHKVDTFQSVYKKLTGREV 580
+ N + I DT Q + K G V
Sbjct: 238 VASNCSVSKIASFADTVQMCFSKGLGAPV 266
>U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical
protein F07F6.4 protein.
Length = 529
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +2
Query: 110 SNSKPTPTSKPNFGSFTLQKLKKLNYTIRSRSSSMCR 220
S+SK T F SF Q ++K YT S SSS R
Sbjct: 376 SSSKKTTKEDDFFDSFETQPVQKSRYTASSSSSSTSR 412
>U23179-7|AAC46721.1| 782|Caenorhabditis elegans Hypothetical
protein C27D6.1 protein.
Length = 782
Score = 28.3 bits (60), Expect = 4.9
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Frame = +1
Query: 31 VKMSTKIIKASGAEADSFE---TSISQALVELETNSDLKAQLRELYITKAKEIELHNKKS 201
+K + K K AEA+ ++ T S+ L ELE Q +E + K++E+E+ NK+
Sbjct: 242 LKANEKARKEIEAEAEKWKDRATRNSKRLPELELELAETVQAKEEWQVKSQEMEIQNKQL 301
Query: 202 I 204
+
Sbjct: 302 V 302
>U70849-11|AAK29800.1| 897|Caenorhabditis elegans Hypothetical
protein F29B9.2b protein.
Length = 897
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +2
Query: 461 VKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEF 592
VK+ GS +D Q+T K+DTF+ +++ R + + F
Sbjct: 379 VKIMGSDYEVDTIDVYNQSTYSMKLDTFRKLFRDTKNRPLLYNF 422
>U70849-10|AAK29799.1| 910|Caenorhabditis elegans Hypothetical
protein F29B9.2a protein.
Length = 910
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +2
Query: 461 VKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEF 592
VK+ GS +D Q+T K+DTF+ +++ R + + F
Sbjct: 392 VKIMGSDYEVDTIDVYNQSTYSMKLDTFRKLFRDTKNRPLLYNF 435
>Z78420-2|CAB01710.3| 738|Caenorhabditis elegans Hypothetical
protein F45H11.3 protein.
Length = 738
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = -1
Query: 132 VGVGFEFDQRLRDRGLEGIRLSTARFDDL 46
V VGFE RLRD+GL +LS +D L
Sbjct: 522 VEVGFENWIRLRDKGLSHSQLSCQLYDTL 550
>AF036706-9|AAK39281.1| 681|Caenorhabditis elegans Hypothetical
protein T07A9.9a protein.
Length = 681
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +1
Query: 343 KTRVANKQKRPRSRTLTSVYDAILEDLVFPG*DRRQAH 456
K ++ K K RSR+L++V A ++L FP + ++AH
Sbjct: 599 KPQLGKKMKVGRSRSLSAVRPAPRDELAFPD-EEKRAH 635
>AC024792-1|AAK84610.1| 938|Caenorhabditis elegans Importin beta
family protein 5 protein.
Length = 938
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -1
Query: 504 LSKCTLMSCEPSNLTLMRLPTISAREDQVLEDSI 403
L KC L + EP L L + + R+DQ+ D I
Sbjct: 167 LKKCLLSTQEPLTLLLRNMMEVGQRKDQLGADEI 200
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,154,473
Number of Sequences: 27780
Number of extensions: 292040
Number of successful extensions: 864
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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