Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_M19
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyce...    28   1.0  
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    27   3.1  
SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharom...    25   7.2  
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch...    25   7.2  
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    25   7.2  
SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyc...    25   9.5  

>SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 456

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = -2

Query: 120 YNCISRSVCLDFVHFNVDCWCNFN---VRAWYDRM 25
           +NC   S   DF  FN+  WC ++   V  +YDR+
Sbjct: 209 FNCGDESERADFYAFNMYEWCGYSSMTVSGYYDRI 243


>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 189 FLGVYLIISKLFWTFWSLYGH 251
           F+G +L+   +FW  W+ Y H
Sbjct: 420 FIGCFLLPISMFWFAWTCYPH 440


>SPAC6F6.12 |||autophagy associated protein
           Atg24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 401

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 464 KKLAKHFTKIINHPITEQSPSIQRYLKN 547
           K L ++ T+   HP+  QSP    +L+N
Sbjct: 107 KLLNRYITRCALHPVLHQSPHFIAFLEN 134


>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 487

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +2

Query: 404 DITKNISELTVLSFRKLDDVKKLAKHFTKIINHPITEQSPSIQ 532
           +++ + S   VLS R  D +     H  ++ N  IT Q P  Q
Sbjct: 193 EMSNHCSPKIVLSLRPQDKIPDFITHVLELKNKKITYQGPKEQ 235


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 581 FGKLSSCAFPVSSLGNVECLDFV 513
           FGK+ SC   V  LGN +   FV
Sbjct: 191 FGKILSCKVAVDELGNAKGYGFV 213


>SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 329

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 18/54 (33%), Positives = 29/54 (53%)
 Frame = +3

Query: 192 LGVYLIISKLFWTFWSLYGHSTSDSSTLKHNTSGGAD*ILALPRKSQNSQQISF 353
           L   L+ S+ FWTF+SL   S+ D ++   +T       + L  KSQ ++ IS+
Sbjct: 152 LNEVLLNSRDFWTFFSLIQASSFDMASDAFSTFKS----ILLNHKSQVAEFISY 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,408,614
Number of Sequences: 5004
Number of extensions: 45466
Number of successful extensions: 175
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)