Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_M18
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.03c |||abhydrolase family protein, unknown biological r...    34   0.015
SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces pom...    31   0.14 
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    28   1.3  
SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|c...    27   2.3  
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch...    26   4.1  
SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe...    25   7.2  
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    25   7.2  

>SPAC6G10.03c |||abhydrolase family protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 428

 Score = 34.3 bits (75), Expect = 0.015
 Identities = 29/122 (23%), Positives = 58/122 (47%), Gaps = 13/122 (10%)
 Frame = +1

Query: 310 SGDPSKPLMIFLHGFPE---FWYSWRYQILE-FKKDYWCIAVDMRGYGDSERVE-DVSAY 474
           +G  +K  ++++HG+     F++     + +   KD+    VD  G G+S R   D+   
Sbjct: 86  TGKANKRSIVYMHGYGAGLGFYFRNMDGLTKGVTKDFNSYFVDWLGMGNSSRPPFDIKGQ 145

Query: 475 KLNLLIDDI-KYLVKEL-------GREKCILVSHDWGGAIANAIRNAYPEIVSALIMLAS 630
             +  +++  ++  + L       G EK ILV H  GG ++      YPE V  L++++ 
Sbjct: 146 TASEKVEETERFFTESLETWRIGHGIEKMILVGHSMGGYLSAVYAMQYPERVEKLLLVSP 205

Query: 631 MS 636
           ++
Sbjct: 206 VA 207


>SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 341

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
 Frame = +1

Query: 415 IAVDMRGYGDSERVEDVSAYKLNLLIDDIKYLVKELGR-----EKCILVSHDWGGAI 570
           +A+D+R +G++  +E  S   L  L  D  + V  + R     EK ILV H  GGAI
Sbjct: 103 LALDLRAHGETT-LEPESDMSLETLSKDFTHAVSYVQRMFELDEKIILVGHSLGGAI 158


>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 17/75 (22%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
 Frame = +1

Query: 304 IESGDPSKPLMIFLHGFPEFWYSWRYQILEFKKDYWCIAVDMRGYGDSERVEDVSAYKLN 483
           I SG P +  +  L    +F +  R   L   ++ + + +++ GY ++  V+  +AYK  
Sbjct: 467 ILSGTPIQNNLTELWNLFDFVFPGRLGTLPVFQNQFALPINIGGYANASNVQVQTAYKCA 526

Query: 484 LLIDDI--KYLVKEL 522
            ++ D+   YL++ +
Sbjct: 527 CMLRDLISPYLLRRM 541


>SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
 Frame = +1

Query: 421 VDMRGYGDSERVEDVSAYKLNLLIDDIKYLVKE--LGREKCILVSHDWGGAIANAIRNAY 594
           +  RGYG S      +  K++     ++YL++     + K ++     GGA+A A+    
Sbjct: 123 ISYRGYGKSTGSPSEAGLKIDSQTA-LEYLMEHPICSKTKIVVYGQSIGGAVAIALTAKN 181

Query: 595 PEIVSALIM 621
            + +SALI+
Sbjct: 182 QDRISALIL 190


>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 611

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +1

Query: 187 NPFRNPWEQKLRLVPPAPLSDPKYGIHKNIKVNGIKL 297
           +PF  P    + L+   PLS    G+H +I VNGI+L
Sbjct: 469 HPFTAPHWDDVHLLEKKPLS--VRGLHYDIVVNGIEL 503


>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 675

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 68  YV*IDTEYEAIYLSVCRNERVNAV 139
           YV    EYE I +++C NE +NA+
Sbjct: 363 YVNGTIEYEQICVNLCSNEPLNAI 386


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
           Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -2

Query: 150 ESRKTALTRSLRQTDKYIASYSVSIQ 73
           +++ T +T  LRQTD Y+ S + +++
Sbjct: 340 QAKDTRITHLLRQTDHYLDSLAAAVK 365


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,660,890
Number of Sequences: 5004
Number of extensions: 55375
Number of successful extensions: 147
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)