Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_M17
         (428 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.08c |cox12||cytochrome c oxidase subunit VIb|Schizosacc...    60   2e-10
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos...    30   0.13 
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    27   0.93 
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    27   0.93 
SPAC806.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         25   6.6  
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    24   8.7  

>SPCC1442.08c |cox12||cytochrome c oxidase subunit
           VIb|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 83

 Score = 59.7 bits (138), Expect = 2e-10
 Identities = 23/44 (52%), Positives = 28/44 (63%)
 Frame = +3

Query: 147 CQKVRGEKYEPCYYFKRVYRSLCPNEWVDKWDNQRAEGTFAGRI 278
           C K +GE + PC  F   Y+SLCP EWV++WD QR  GTF   I
Sbjct: 40  CIKAKGEDFVPCKQFWHAYQSLCPMEWVERWDEQRENGTFPAPI 83



 Score = 41.5 bits (93), Expect = 5e-05
 Identities = 14/20 (70%), Positives = 18/20 (90%)
 Frame = +2

Query: 86  RFPNQNQTRHCYQSYVDFHR 145
           RFPN NQT+HC+QSY+D+ R
Sbjct: 20  RFPNTNQTKHCFQSYIDYFR 39


>SPAC328.04 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 30.3 bits (65), Expect = 0.13
 Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
 Frame = +1

Query: 46  QIARRPQNSTFRPTVP*PKSDEALLP-KLRGLPPXARKFAAKNTSHATISRECTGLSAPM 222
           + ARR  +S    + P  K  ++ LP +   +P  +++ +  +TS AT++     +S+  
Sbjct: 276 EAARRTYSSISSSSSPFKKKTQSHLPNRTTEVPSISKQLSKSSTSIATVAPSLASVSSVT 335

Query: 223 SGSTSGTTSAPKAPS 267
              +    SAP+A S
Sbjct: 336 KSPSPTPQSAPRAQS 350


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1639

 Score = 27.5 bits (58), Expect = 0.93
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +3

Query: 63   SKQHLSTH-GSLT-KIRRGTATKVTWTSTXCQKVRGEKYEP 179
            SK+ +  H GS++ + RRG  T+  WT+T        K+EP
Sbjct: 1192 SKELVELHNGSMSCQSRRGVGTRFMWTATFTMDKTPLKFEP 1232


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 27.5 bits (58), Expect = 0.93
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +1

Query: 115 LLPKLRGLPPXARKFAAKNTSHATISRECTGLSAPMSGST-SGTTSAPKAPSPVGFRS*T 291
           LLP+ RG PP  R+   +N     I+   T  S   S +T    +S+P + SP+   S  
Sbjct: 423 LLPRKRGRPPKKRQ---ENAEIRNITPGLTDSSVHSSSATPQSESSSPNSVSPLLPSSDR 479

Query: 292 FPML 303
            P+L
Sbjct: 480 LPLL 483


>SPAC806.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 72

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 243 CPTCRPTHWGRETCTL 196
           CPT  PT W   +CT+
Sbjct: 3   CPTHGPTTWNPHSCTV 18


>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 5/62 (8%)
 Frame = +1

Query: 112 ALLPKLRGLPPXARKFAAKNTSHATISRE-----CTGLSAPMSGSTSGTTSAPKAPSPVG 276
           +++    G PP A KF+ K  S   +S +         + P+          P AP+P  
Sbjct: 79  SIMSATMGTPPSALKFSKKKISRPVVSEDTFKDKLPRATIPVKPEPQPQYKIPAAPAPTS 138

Query: 277 FR 282
            R
Sbjct: 139 KR 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,557,200
Number of Sequences: 5004
Number of extensions: 31117
Number of successful extensions: 99
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)