Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP08_F_M17
(428 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024859-18|AAK29974.1| 121|Caenorhabditis elegans Hypothetical... 53 1e-07
Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical p... 31 0.35
Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical p... 31 0.35
Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical pr... 31 0.35
Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical pr... 31 0.35
AC024777-4|AAF60561.3| 627|Caenorhabditis elegans Hypothetical ... 31 0.46
AL132860-5|CAB60515.1| 798|Caenorhabditis elegans Hypothetical ... 29 1.1
Z78418-3|CAB01697.1| 932|Caenorhabditis elegans Hypothetical pr... 29 1.4
AL032631-9|CAA21575.2| 893|Caenorhabditis elegans Hypothetical ... 29 1.9
Z66494-12|CAE17686.1| 1007|Caenorhabditis elegans Hypothetical p... 28 2.5
Z66494-11|CAA91265.2| 1048|Caenorhabditis elegans Hypothetical p... 28 2.5
Z54284-8|CAE17775.1| 1007|Caenorhabditis elegans Hypothetical pr... 28 2.5
Z54284-7|CAA91065.2| 1048|Caenorhabditis elegans Hypothetical pr... 28 2.5
AF039718-5|AAP68905.1| 760|Caenorhabditis elegans Prion-like-(q... 28 2.5
AF039718-4|AAP68906.2| 696|Caenorhabditis elegans Prion-like-(q... 28 2.5
Z70311-3|CAA94372.1| 546|Caenorhabditis elegans Hypothetical pr... 27 4.3
U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog (hedg... 27 7.5
U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical pr... 26 10.0
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr... 26 10.0
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 26 10.0
AF000263-15|AAG00018.1| 416|Caenorhabditis elegans Hypothetical... 26 10.0
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 26 10.0
>AC024859-18|AAK29974.1| 121|Caenorhabditis elegans Hypothetical
protein Y71H2AM.5 protein.
Length = 121
Score = 52.8 bits (121), Expect = 1e-07
Identities = 16/43 (37%), Positives = 27/43 (62%)
Frame = +3
Query: 147 CQKVRGEKYEPCYYFKRVYRSLCPNEWVDKWDNQRAEGTFAGR 275
C ++ G+ Y+PC +F+ VY+ CP W ++WD +EG F +
Sbjct: 76 CNELMGQDYKPCKFFQNVYKDFCPGFWTERWDELLSEGRFPAK 118
Score = 40.7 bits (91), Expect = 4e-04
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +2
Query: 62 LKTAPFDPRFPNQNQTRHCYQSYVDFHRLPESSRRKIRAMLLFQ 193
L AP+D RFP + R C+ YVDFHR E + + FQ
Sbjct: 48 LWAAPYDARFPQVRKQRQCFAYYVDFHRCNELMGQDYKPCKFFQ 91
>Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical
protein ZK617.1b protein.
Length = 7158
Score = 31.1 bits (67), Expect = 0.35
Identities = 20/60 (33%), Positives = 29/60 (48%)
Frame = +1
Query: 88 VP*PKSDEALLPKLRGLPPXARKFAAKNTSHATISRECTGLSAPMSGSTSGTTSAPKAPS 267
+P P DE KLR P RK ++ ++ T SR+ + SG+T + SA A S
Sbjct: 305 LPPPGGDEK---KLRAGSPSTRKSPSRKSASPTPSRKGSSAGGAASGTTGASASATSATS 361
>Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical
protein ZK617.1a protein.
Length = 6839
Score = 31.1 bits (67), Expect = 0.35
Identities = 20/60 (33%), Positives = 29/60 (48%)
Frame = +1
Query: 88 VP*PKSDEALLPKLRGLPPXARKFAAKNTSHATISRECTGLSAPMSGSTSGTTSAPKAPS 267
+P P DE KLR P RK ++ ++ T SR+ + SG+T + SA A S
Sbjct: 305 LPPPGGDEK---KLRAGSPSTRKSPSRKSASPTPSRKGSSAGGAASGTTGASASATSATS 361
>Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical
protein ZK617.1b protein.
Length = 7158
Score = 31.1 bits (67), Expect = 0.35
Identities = 20/60 (33%), Positives = 29/60 (48%)
Frame = +1
Query: 88 VP*PKSDEALLPKLRGLPPXARKFAAKNTSHATISRECTGLSAPMSGSTSGTTSAPKAPS 267
+P P DE KLR P RK ++ ++ T SR+ + SG+T + SA A S
Sbjct: 305 LPPPGGDEK---KLRAGSPSTRKSPSRKSASPTPSRKGSSAGGAASGTTGASASATSATS 361
>Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical
protein ZK617.1a protein.
Length = 6839
Score = 31.1 bits (67), Expect = 0.35
Identities = 20/60 (33%), Positives = 29/60 (48%)
Frame = +1
Query: 88 VP*PKSDEALLPKLRGLPPXARKFAAKNTSHATISRECTGLSAPMSGSTSGTTSAPKAPS 267
+P P DE KLR P RK ++ ++ T SR+ + SG+T + SA A S
Sbjct: 305 LPPPGGDEK---KLRAGSPSTRKSPSRKSASPTPSRKGSSAGGAASGTTGASASATSATS 361
>AC024777-4|AAF60561.3| 627|Caenorhabditis elegans Hypothetical
protein Y42H9AR.4 protein.
Length = 627
Score = 30.7 bits (66), Expect = 0.46
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 9/78 (11%)
Frame = +1
Query: 76 FRPTVP*PKSDEALLP---------KLRGLPPXARKFAAKNTSHATISRECTGLSAPMSG 228
F+ V P SDEAL + R PP +R+ + + + S++ + + +S
Sbjct: 195 FKEIVLDPYSDEALQKYFVNEPWKYRKRAPPPASRRKSLNTSLNGKNSKKVSISNEVISP 254
Query: 229 STSGTTSAPKAPSPVGFR 282
+T+GT SAP+ S G+R
Sbjct: 255 TTNGTRSAPRKASLAGYR 272
>AL132860-5|CAB60515.1| 798|Caenorhabditis elegans Hypothetical
protein Y56A3A.6 protein.
Length = 798
Score = 29.5 bits (63), Expect = 1.1
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Frame = +1
Query: 55 RRPQNSTFRPTVP*PKSDEALLPKLRG-LPPXARKFAAKNTSHATISRECTGLSAPMSGS 231
RRP N+T P+ + A + K+ PP AR + A + LSA S +
Sbjct: 605 RRPLNNTEVPSPVTYRKISAPVQKVTSPAPPAARSVSTDQPPPANRRSQVGILSATSSKA 664
Query: 232 TSGTTSAPKAPSPVG 276
T TSA P P G
Sbjct: 665 TVTVTSATSPPYPKG 679
>Z78418-3|CAB01697.1| 932|Caenorhabditis elegans Hypothetical
protein F25D7.4 protein.
Length = 932
Score = 29.1 bits (62), Expect = 1.4
Identities = 20/62 (32%), Positives = 30/62 (48%)
Frame = +1
Query: 97 PKSDEALLPKLRGLPPXARKFAAKNTSHATISRECTGLSAPMSGSTSGTTSAPKAPSPVG 276
P+ A PK P A+K A A S+ + +SAP + + + T+SAP A +P
Sbjct: 381 PRGAPAKAPKAE---PIAQKKVAGKVQRAAPSKPASAVSAPKATAPASTSSAP-ATAPEA 436
Query: 277 FR 282
R
Sbjct: 437 SR 438
>AL032631-9|CAA21575.2| 893|Caenorhabditis elegans Hypothetical
protein Y106G6H.7 protein.
Length = 893
Score = 28.7 bits (61), Expect = 1.9
Identities = 20/63 (31%), Positives = 29/63 (46%)
Frame = +1
Query: 97 PKSDEALLPKLRGLPPXARKFAAKNTSHATISRECTGLSAPMSGSTSGTTSAPKAPSPVG 276
PK+ + LP LP +K +A T+ ISR L + S S T A ++ VG
Sbjct: 547 PKNPDPSLPNSEALPTRRQKISAAWTADDDISRLLMSLPNWHAASISPMTPAVESELDVG 606
Query: 277 FRS 285
R+
Sbjct: 607 ERN 609
>Z66494-12|CAE17686.1| 1007|Caenorhabditis elegans Hypothetical
protein D2085.5b protein.
Length = 1007
Score = 28.3 bits (60), Expect = 2.5
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = -3
Query: 363 HILFY*ITSFDLIKTNRNKLKHRERLGSKSYRRRCLRRAGCPTCRPTHWG 214
H LF + D++ +KL+ + RR CLR C PT +G
Sbjct: 136 HFLF----ALDIVMIESSKLRLHPSISEVEVRRACLRALSSVICWPTTFG 181
>Z66494-11|CAA91265.2| 1048|Caenorhabditis elegans Hypothetical
protein D2085.5a protein.
Length = 1048
Score = 28.3 bits (60), Expect = 2.5
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = -3
Query: 363 HILFY*ITSFDLIKTNRNKLKHRERLGSKSYRRRCLRRAGCPTCRPTHWG 214
H LF + D++ +KL+ + RR CLR C PT +G
Sbjct: 177 HFLF----ALDIVMIESSKLRLHPSISEVEVRRACLRALSSVICWPTTFG 222
>Z54284-8|CAE17775.1| 1007|Caenorhabditis elegans Hypothetical
protein D2085.5b protein.
Length = 1007
Score = 28.3 bits (60), Expect = 2.5
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = -3
Query: 363 HILFY*ITSFDLIKTNRNKLKHRERLGSKSYRRRCLRRAGCPTCRPTHWG 214
H LF + D++ +KL+ + RR CLR C PT +G
Sbjct: 136 HFLF----ALDIVMIESSKLRLHPSISEVEVRRACLRALSSVICWPTTFG 181
>Z54284-7|CAA91065.2| 1048|Caenorhabditis elegans Hypothetical
protein D2085.5a protein.
Length = 1048
Score = 28.3 bits (60), Expect = 2.5
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = -3
Query: 363 HILFY*ITSFDLIKTNRNKLKHRERLGSKSYRRRCLRRAGCPTCRPTHWG 214
H LF + D++ +KL+ + RR CLR C PT +G
Sbjct: 177 HFLF----ALDIVMIESSKLRLHPSISEVEVRRACLRALSSVICWPTTFG 222
>AF039718-5|AAP68905.1| 760|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
isoform a protein.
Length = 760
Score = 28.3 bits (60), Expect = 2.5
Identities = 13/54 (24%), Positives = 22/54 (40%)
Frame = +1
Query: 142 PXARKFAAKNTSHATISRECTGLSAPMSGSTSGTTSAPKAPSPVGFRS*TFPML 303
P +K + H+ + ++ + ++ AP APSP F FP L
Sbjct: 691 PLPQKPKIETNHHSAVEKDAEKIKVRSPPVVVASSPAPAAPSPFSFEETAFPSL 744
>AF039718-4|AAP68906.2| 696|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
isoform b protein.
Length = 696
Score = 28.3 bits (60), Expect = 2.5
Identities = 13/54 (24%), Positives = 22/54 (40%)
Frame = +1
Query: 142 PXARKFAAKNTSHATISRECTGLSAPMSGSTSGTTSAPKAPSPVGFRS*TFPML 303
P +K + H+ + ++ + ++ AP APSP F FP L
Sbjct: 593 PLPQKPKIETNHHSAVEKDAEKIKVRSPPVVVASSPAPAAPSPFSFEETAFPSL 646
>Z70311-3|CAA94372.1| 546|Caenorhabditis elegans Hypothetical
protein T25B9.4 protein.
Length = 546
Score = 27.5 bits (58), Expect = 4.3
Identities = 20/78 (25%), Positives = 34/78 (43%)
Frame = +1
Query: 43 DQIARRPQNSTFRPTVP*PKSDEALLPKLRGLPPXARKFAAKNTSHATISRECTGLSAPM 222
D ++ +N T +P P++ LP LPP +KN+ +T+ R+ S
Sbjct: 420 DSSTKKMRNDTV--CIPPPETATVALPN--SLPPITVSARSKNSRKSTLKRKKKKTSKDS 475
Query: 223 SGSTSGTTSAPKAPSPVG 276
S +T+ T + P G
Sbjct: 476 SMTTTTTNTNESEPPADG 493
>U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 6 protein.
Length = 559
Score = 26.6 bits (56), Expect = 7.5
Identities = 20/78 (25%), Positives = 30/78 (38%)
Frame = +1
Query: 58 RPQNSTFRPTVP*PKSDEALLPKLRGLPPXARKFAAKNTSHATISRECTGLSAPMSGSTS 237
RPQ RP V + + + P R + T+ T + L+ + +
Sbjct: 243 RPQPPRTRPYVAPSTTTQRYIEPTTQRPTTRRATTKRITTTTTAAPTTPRLTTARATTPL 302
Query: 238 GTTSAPKAPSPVGFRS*T 291
TTS P PSP R+ T
Sbjct: 303 ATTSRPTTPSPTTPRATT 320
>U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical
protein K06A9.1c protein.
Length = 825
Score = 26.2 bits (55), Expect = 10.0
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 184 TISRECTGLSAPMSGSTSGTTSAPKAPSP 270
+++ E T S SGS+ GT S +PSP
Sbjct: 451 SVATEVTSQSTVPSGSSLGTQSTNSSPSP 479
>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
protein K06A9.1a protein.
Length = 1032
Score = 26.2 bits (55), Expect = 10.0
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 184 TISRECTGLSAPMSGSTSGTTSAPKAPSP 270
+++ E T S SGS+ GT S +PSP
Sbjct: 658 SVATEVTSQSTVPSGSSLGTQSTNSSPSP 686
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
protein K06A9.1b protein.
Length = 2232
Score = 26.2 bits (55), Expect = 10.0
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 184 TISRECTGLSAPMSGSTSGTTSAPKAPSP 270
+++ E T S SGS+ GT S +PSP
Sbjct: 658 SVATEVTSQSTVPSGSSLGTQSTNSSPSP 686
Score = 26.2 bits (55), Expect = 10.0
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +1
Query: 169 NTSHATISRECTGLSAPMSGSTSGTTSAPKAPSPVG 276
+T H T+S+ +G ++P + S +G+T + S G
Sbjct: 1442 STQHTTMSKASSGSTSPSTNSQTGSTVTMGSSSTSG 1477
>AF000263-15|AAG00018.1| 416|Caenorhabditis elegans Hypothetical
protein T08B2.11 protein.
Length = 416
Score = 26.2 bits (55), Expect = 10.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 184 TISRECTGLSAPMSGSTSGTTSAPKA 261
T ++ + LSA + G TSG APKA
Sbjct: 101 THRKKKSSLSASLEGKTSGENEAPKA 126
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 26.2 bits (55), Expect = 10.0
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = +1
Query: 139 PPXARKF---AAKNTSHATISRECTGLSAPMSGSTSGTTSAPKAPSPVG 276
PP A + A+ + A++S C ++A + + + S+PK PS G
Sbjct: 286 PPDALTYLQPASVSAIPASVSVACAAITAKVMAAEAAAGSSPKTPSESG 334
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,682,636
Number of Sequences: 27780
Number of extensions: 175086
Number of successful extensions: 619
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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