Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_M15
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   115   7e-27
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    25   7.2  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score =  115 bits (276), Expect = 7e-27
 Identities = 66/163 (40%), Positives = 83/163 (50%), Gaps = 2/163 (1%)
 Frame = +1

Query: 115 ELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 288
           EL  PGS  L G+ Q+YN  ++AH                  N LVPL++GAPD+A+PR+
Sbjct: 45  ELSAPGSQFLSGNGQLYNVAISAHGILMIFFFIIPALFGAFGNYLVPLMIGAPDVAYPRV 104

Query: 289 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 468
           NN  F              + E G G G TVYPPLSS  +H G ++DLAI SL L GISS
Sbjct: 105 NNFTFWLLPPALMLLLISALTEEGPGGGWTVYPPLSSITSHSGPAIDLAILSLQLTGISS 164

Query: 469 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFLLLLSLP 597
                              S  Q+PLF  A+ IT+ LLLL+LP
Sbjct: 165 TLGSVNLIATMINMRAPGLSLYQMPLFAWAIMITSILLLLTLP 207



 Score = 28.3 bits (60), Expect = 1.0
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = +2

Query: 599 VLAGAITILLTDRNLNTS 652
           VLAG + +L +DRNLNTS
Sbjct: 208 VLAGGLFMLFSDRNLNTS 225



 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 15 IYSTNHKDIGTLYFIF 62
          I+STN KDI  LY +F
Sbjct: 12 IFSTNAKDIAILYLLF 27


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 306 TPTPLPYIINFKKNCRKWCRNRMNS 380
           T T   YIINFKKN   + R +++S
Sbjct: 512 TKTTEEYIINFKKNSWLFFRKKIDS 536


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,017,867
Number of Sequences: 5004
Number of extensions: 32491
Number of successful extensions: 70
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)