Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_M11
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    29   0.77 
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom...    28   1.0  
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch...    28   1.0  
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    28   1.0  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    27   1.8  
SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||...    27   3.1  
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    27   3.1  
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    26   5.5  
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    26   5.5  
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    25   9.5  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   9.5  

>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +3

Query: 318 KCASEKEVCAKCCQNINIEKQEDKKTDI 401
           +C  E  VC   CQN   ++ E  K D+
Sbjct: 157 ECTDEDNVCGPSCQNQRFQRHEFAKVDV 184


>SPBC18H10.09 |||zinc finger protein, zf-CHY
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
 Frame = +3

Query: 183 GVCQRCKNILEWKIKYKKYKPLAVPTKCTSCLEK-TVKHAYHVLCSKCASE----KEVCA 347
           G C+  K    W  ++     +    +C    +  T +HA  ++C  CA E    K+   
Sbjct: 327 GACEHYKKSFRW-FRFSCCDRVYPCDECHDADQNHTFEHANRIICGYCAMESFYKKDATC 385

Query: 348 KCCQNINIEKQ 380
             C N+ ++KQ
Sbjct: 386 PHCGNMTVKKQ 396


>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 563

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +3

Query: 231 KKYKPLAVPTKCTSCLEKTVKHAYHVLCSKCASEKEVC 344
           KK++  + P  C  C  + VK      CS+C    EVC
Sbjct: 9   KKFRKRS-PKSCLICRRRKVKCDRQQPCSRCKERNEVC 45


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 141 TSHKTKFINSLEIRGVCQRCKNILEWK 221
           +S  T+    L I G+C +CK +L W+
Sbjct: 212 SSFLTEECQVLPIEGMCTKCKRVLRWR 238


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
            Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 22/75 (29%), Positives = 35/75 (46%)
 Frame = +3

Query: 126  NDLHDTSHKTKFINSLEIRGVCQRCKNILEWKIKYKKYKPLAVPTKCTSCLEKTVKHAYH 305
            N L + SH   F N+ +I GV  +  NILE        +   +    +S LE+ VK +  
Sbjct: 1185 NKLINPSHSVIFFNTDDILGVESKTNNILE-----NHTEAFLIEQAVSSFLERGVKQSSI 1239

Query: 306  VLCSKCASEKEVCAK 350
             + S   S+ E+ +K
Sbjct: 1240 GIISIYKSQVELLSK 1254


>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +3

Query: 165 NSLEIRGVCQRCKNILEWKIKYKKYKPLAVPTKCTSCLEK 284
           N+ E   VC  C  I++  ++ KK   L+ PT+C+SC ++
Sbjct: 572 NNNESFAVCLACA-IIQRSLERKK---LSTPTQCSSCFQE 607


>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 673

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +3

Query: 165 NSLEIRGVCQRCKNILEWKIKYKKYKPLAVPTKCTSCLEK 284
           N+ E   VC  C  I++  ++ KK   L+ PT+C+SC ++
Sbjct: 572 NNNESFAVCLACA-IIQRSLERKK---LSTPTQCSSCFQE 607


>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +3

Query: 213 EWKIKYKKYKPLAVPTKCTSC-LEKTVKH 296
           +W  K +  KP+A P + TSC +  T++H
Sbjct: 483 KWNRKVQYIKPVAPPYRQTSCYITDTIQH 511


>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
 Frame = +3

Query: 303 HVL-CSKCASEKEVCAKCCQNINIEKQEDKKTDILGKLSGLSER 431
           HVL  S   S + VC  CC N  +        D+    SG+  +
Sbjct: 437 HVLPTSDGTSVRSVCVSCCGNFGLIGSSKGVVDVYNMQSGIKRK 480


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 264 CTSCLEKTVKHAYHVLCSKCA 326
           C  C +K    AYH+ C++ A
Sbjct: 317 CVQCSDKNCYAAYHITCARRA 337


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/46 (26%), Positives = 20/46 (43%)
 Frame = +3

Query: 201  KNILEWKIKYKKYKPLAVPTKCTSCLEKTVKHAYHVLCSKCASEKE 338
            +++  W I +K Y      T   S ++     A  VL  +  S+KE
Sbjct: 2720 RDLTRWLISFKNYAESYAETNNLSLIKVWYHEACRVLLDRLVSQKE 2765


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,323,185
Number of Sequences: 5004
Number of extensions: 43863
Number of successful extensions: 164
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)