Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP08_F_M11
(653 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0801 - 32085110-32085274,32086318-32086365,32086441-320864... 113 1e-25
06_03_0070 - 16202214-16202273,16202316-16202504,16204219-162043... 29 2.4
02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-57... 29 2.4
08_01_0604 - 5312558-5312622,5312826-5312917,5314128-5314245,531... 29 3.2
07_01_1157 + 10954619-10954835,10956078-10957114 29 4.3
05_03_0622 - 16293341-16293350,16293783-16294063,16294343-162944... 28 5.6
11_03_0120 - 10255303-10255518,10256490-10256582,10256774-102568... 28 7.5
06_01_0618 - 4492057-4492590,4492780-4493192,4493714-4494026,449... 27 9.9
>01_06_0801 -
32085110-32085274,32086318-32086365,32086441-32086483,
32086588-32086651,32086740-32086792,32086899-32086937,
32087031-32087113,32087200-32087280
Length = 191
Score = 113 bits (272), Expect = 1e-25
Identities = 56/143 (39%), Positives = 87/143 (60%), Gaps = 10/143 (6%)
Frame = +3
Query: 78 TNRTRPQKHQNRAAFKNDLHDTSHKT----KFINSLEIRGVCQRCKNILEWKIKYKKYKP 245
+ R P KHQNR A+K +L ++T +F EI GVCQRCK+ ++WK +Y KYKP
Sbjct: 2 SKRQGPPKHQNRYAWKPNLGQKINETEPGGRFRPLSEITGVCQRCKDQIDWKRRYGKYKP 61
Query: 246 LAVPTKCTSCLEKTVKHAYHVLCSKCASEKEVCAKCCQNI------NIEKQEDKKTDILG 407
+ P KC C ++ V+ AYH +C+ C+ + +CAKCC + ++ +QE ++ ++
Sbjct: 62 IVEPAKCQKCGKRNVRQAYHNVCTACSKDLGICAKCCTCVKALVGRDLSEQESERKELEE 121
Query: 408 KLSGLSERKRRTVLRYLKNQEDG 476
+ G ER+RRT+LR L N+ G
Sbjct: 122 AIRGARERERRTLLR-LMNKGGG 143
>06_03_0070 -
16202214-16202273,16202316-16202504,16204219-16204385,
16204520-16204658,16205317-16205412,16206052-16206237,
16206388-16206390
Length = 279
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -2
Query: 151 LWLVSCKSFLKAARFWCFCGLVLL 80
LWLV + RFWCFC LV +
Sbjct: 130 LWLVPHFLPIHPGRFWCFCRLVYM 153
>02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-579174,
579266-579370,579975-580028,580244-580344,580454-581423,
582030-582203,582341-582643,582719-582856,582993-583247,
584230-584370,585008-585289,585395-585540,585627-585690,
585723-585799,586285-586301,587728-587867,587972-588029,
588121-588218,588727-588776,589260-589743
Length = 2630
Score = 29.5 bits (63), Expect = 2.4
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Frame = +3
Query: 135 HDTSHKTKFI-NSLEIRGVCQRCKNILEWKIKYKKYKPLAVPTKCTSCLEKTVKHAYHVL 311
H + K+I ++L I +C R +I +K+ +K+ LA C E+ + Y L
Sbjct: 1202 HVVVQEPKYIFHALNI-ALCWRVASIHNFKVDHKESLALAEKRLKYECNEELARLVYDSL 1260
Query: 312 CSKCASEKEVCAKCCQNINIEKQEDKKTD 398
K + CQ+ ++EK + + +
Sbjct: 1261 KRKFPKKAGATGSNCQSTSVEKTKPSQQE 1289
>08_01_0604 -
5312558-5312622,5312826-5312917,5314128-5314245,
5314423-5314438
Length = 96
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 258 TKCTSCLEKTVKHAYHVLCSKCASEKEVCAKCCQNI 365
TKC C ++ + A + C CA K VCA C + +
Sbjct: 52 TKCVICKQQVHQDAKY--CHTCAYSKGVCAMCGKQV 85
>07_01_1157 + 10954619-10954835,10956078-10957114
Length = 417
Score = 28.7 bits (61), Expect = 4.3
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Frame = -2
Query: 277 KQLVHLVGTASGLYFLYLIFHSR----MFLHR*QTPRISKEFINLVLWLVSCKSFLKAAR 110
+++VH+ S LYF Y + + R ++L R R + IN+ L +SC SFL +
Sbjct: 40 RKIVHMPHLCSELYFAYGLRYGRNFGTIYLRRLGLSRFIAK-INISLCCLSCHSFLYISP 98
Query: 109 F 107
F
Sbjct: 99 F 99
>05_03_0622 - 16293341-16293350,16293783-16294063,16294343-16294474,
16294561-16294741,16295054-16295096,16295183-16295249,
16296708-16296834,16296985-16297620,16298253-16298761,
16298842-16299157,16299615-16300053,16300128-16300353,
16300441-16300625,16300839-16300950,16301459-16301495,
16301977-16302011,16302497-16302810,16303463-16303475
Length = 1220
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/22 (50%), Positives = 18/22 (81%), Gaps = 1/22 (4%)
Frame = -3
Query: 330 QKHI-WSTKRDMRVLQSSLNNS 268
+KH+ WST+ D+R++ + LNNS
Sbjct: 1067 EKHLGWSTEEDLRLVSAWLNNS 1088
>11_03_0120 -
10255303-10255518,10256490-10256582,10256774-10256872,
10258145-10258264,10258345-10258467,10259933-10260046,
10261173-10261361,10263100-10263266,10263829-10263913,
10264176-10264370,10266251-10266436,10266575-10266614,
10267899-10267966
Length = 564
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -2
Query: 151 LWLVSCKSFLKAARFWCFCGLVLLVFPLDKLMVYSFV 41
LWL+ + RFWCFC +V + P+ + F+
Sbjct: 180 LWLLPHFLPIHPGRFWCFCRMVYM--PMSYIYAKRFI 214
>06_01_0618 -
4492057-4492590,4492780-4493192,4493714-4494026,
4495257-4495828,4498324-4498600
Length = 702
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 231 KKYKPLAVPTKCTSCLEKTVKHAYHVLCSKCASEKEV 341
+ + L + + C S L + A V+C+KCA E V
Sbjct: 585 QSFSGLFIISGCISALMLLISVANRVICAKCAKEARV 621
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,387,615
Number of Sequences: 37544
Number of extensions: 234177
Number of successful extensions: 603
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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