Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP08_F_M10
(652 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024200-4|AAF36008.1| 216|Caenorhabditis elegans Ribosomal pro... 130 1e-30
AJ270980-1|CAB65902.1| 186|Caenorhabditis elegans 60s ribosomal... 123 1e-28
AC024200-5|AAK66025.1| 155|Caenorhabditis elegans Ribosomal pro... 123 1e-28
AF067949-5|AAC19234.1| 109|Caenorhabditis elegans Synaptobrevin... 29 2.2
AF003282-1|AAB61235.1| 109|Caenorhabditis elegans SNB-1 protein. 29 2.2
AF003281-1|AAB61234.1| 109|Caenorhabditis elegans SNB-1 protein. 29 2.2
Z70212-2|CAA94163.1| 430|Caenorhabditis elegans Hypothetical pr... 29 2.9
AF099915-5|AAC68770.1| 118|Caenorhabditis elegans Hypothetical ... 29 2.9
AF038613-11|AAB92054.2| 836|Caenorhabditis elegans Mammalian el... 27 8.7
>AC024200-4|AAF36008.1| 216|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 1, isoform a protein.
Length = 216
Score = 130 bits (313), Expect = 1e-30
Identities = 64/123 (52%), Positives = 78/123 (63%)
Frame = +2
Query: 62 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 241
SKVSR++L E + VL+ S +K R F ET+ELQIGLKNYDPQKDKRFSG+++LK+IPRP
Sbjct: 2 SKVSRESLNEAIAEVLKGSSEKPRKFRETIELQIGLKNYDPQKDKRFSGSIRLKHIPRPN 61
Query: 242 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 421
M+VCV GDQ H DEA ++P M SESLIKQIPR
Sbjct: 62 MKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDAFIASESLIKQIPR 121
Query: 422 FVG 430
+G
Sbjct: 122 ILG 124
Score = 123 bits (297), Expect = 1e-28
Identities = 54/80 (67%), Positives = 67/80 (83%)
Frame = +3
Query: 411 RFPXLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDE 590
+ P +LGPGLNKAGKFP +++H ES+ K DE++ T+KFQMKKVLCLSVAVGHV +T +E
Sbjct: 118 QIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVGHVGLTQEE 177
Query: 591 LAQNVHLSINFLVSLLKKHW 650
L N+ LSINFLVSLLKK+W
Sbjct: 178 LVSNISLSINFLVSLLKKNW 197
>AJ270980-1|CAB65902.1| 186|Caenorhabditis elegans 60s ribosomal
protein L10A protein.
Length = 186
Score = 123 bits (297), Expect = 1e-28
Identities = 54/80 (67%), Positives = 67/80 (83%)
Frame = +3
Query: 411 RFPXLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDE 590
+ P +LGPGLNKAGKFP +++H ES+ K DE++ T+KFQMKKVLCLSVAVGHV +T +E
Sbjct: 88 QIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVGHVGLTQEE 147
Query: 591 LAQNVHLSINFLVSLLKKHW 650
L N+ LSINFLVSLLKK+W
Sbjct: 148 LVSNISLSINFLVSLLKKNW 167
Score = 89.4 bits (212), Expect = 2e-18
Identities = 43/87 (49%), Positives = 51/87 (58%)
Frame = +2
Query: 170 KNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXX 349
KNYDPQKDKRFSG+++LK+IPRP M+VCV GDQ H DEA ++P M
Sbjct: 8 KNYDPQKDKRFSGSIRLKHIPRPNMKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKK 67
Query: 350 XXXXXXXXXXXXXXSESLIKQIPRFVG 430
SESLIKQIPR +G
Sbjct: 68 LIKKLAKSYDAFIASESLIKQIPRILG 94
>AC024200-5|AAK66025.1| 155|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 1, isoform b protein.
Length = 155
Score = 123 bits (297), Expect = 1e-28
Identities = 54/80 (67%), Positives = 67/80 (83%)
Frame = +3
Query: 411 RFPXLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDE 590
+ P +LGPGLNKAGKFP +++H ES+ K DE++ T+KFQMKKVLCLSVAVGHV +T +E
Sbjct: 57 QIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVGHVGLTQEE 116
Query: 591 LAQNVHLSINFLVSLLKKHW 650
L N+ LSINFLVSLLKK+W
Sbjct: 117 LVSNISLSINFLVSLLKKNW 136
Score = 44.0 bits (99), Expect = 9e-05
Identities = 24/63 (38%), Positives = 28/63 (44%)
Frame = +2
Query: 242 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 421
M+VCV GDQ H DEA ++P M SESLIKQIPR
Sbjct: 1 MKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDAFIASESLIKQIPR 60
Query: 422 FVG 430
+G
Sbjct: 61 ILG 63
>AF067949-5|AAC19234.1| 109|Caenorhabditis elegans Synaptobrevin
related protein 1 protein.
Length = 109
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/72 (26%), Positives = 33/72 (45%)
Frame = +3
Query: 435 GLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLS 614
G ++ G P Q++ Q +DEV G +K ++KVL + +D D L +
Sbjct: 11 GGSQGGPRPSNKRLQQTQAQ-VDEVVGIMKVNVEKVLERDQKLSQLDDRADALQEGASQF 69
Query: 615 INFLVSLLKKHW 650
+L +K+W
Sbjct: 70 EKSAATLKRKYW 81
>AF003282-1|AAB61235.1| 109|Caenorhabditis elegans SNB-1 protein.
Length = 109
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/72 (26%), Positives = 33/72 (45%)
Frame = +3
Query: 435 GLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLS 614
G ++ G P Q++ Q +DEV G +K ++KVL + +D D L +
Sbjct: 11 GGSQGGPRPSNKRLQQTQAQ-VDEVVGIMKVNVEKVLERDQKLSQLDDRADALQEGASQF 69
Query: 615 INFLVSLLKKHW 650
+L +K+W
Sbjct: 70 EKSAATLKRKYW 81
>AF003281-1|AAB61234.1| 109|Caenorhabditis elegans SNB-1 protein.
Length = 109
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/72 (26%), Positives = 33/72 (45%)
Frame = +3
Query: 435 GLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLS 614
G ++ G P Q++ Q +DEV G +K ++KVL + +D D L +
Sbjct: 11 GGSQGGPRPSNKRLQQTQAQ-VDEVVGIMKVNVEKVLERDQKLSQLDDRADALQEGASQF 69
Query: 615 INFLVSLLKKHW 650
+L +K+W
Sbjct: 70 EKSAATLKRKYW 81
>Z70212-2|CAA94163.1| 430|Caenorhabditis elegans Hypothetical
protein R04D3.3 protein.
Length = 430
Score = 29.1 bits (62), Expect = 2.9
Identities = 20/63 (31%), Positives = 34/63 (53%)
Frame = +2
Query: 11 YNLPSVVIGGSLTNKMSSKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQK 190
Y++ S V G S+ + ++S +D+L E ++ + +S K K LET+ Q G K D
Sbjct: 183 YHIGSQVGGSSMEDVLTSD-EKDSLSEAISNLPKSPKSKTDRDLETL-AQSGSKTRDSHS 240
Query: 191 DKR 199
+R
Sbjct: 241 RRR 243
>AF099915-5|AAC68770.1| 118|Caenorhabditis elegans Hypothetical
protein E02H9.4 protein.
Length = 118
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +2
Query: 119 KDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYI 229
K +K N E VEL +KNY P+ + R V+ KY+
Sbjct: 41 KGEKYNGNEKVELTTTVKNYKPKNNTRKWPAVEAKYL 77
>AF038613-11|AAB92054.2| 836|Caenorhabditis elegans Mammalian
elks/cast/erc/rab6 interactingprotein homolog protein 1
protein.
Length = 836
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 408 SRFPXLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIK 524
SR P G GLN A ++ L ++M +K+++ +IK
Sbjct: 143 SRIPTGTGSGLNIAREYEQLKVEYDTMMEKLNQTMNSIK 181
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,392,684
Number of Sequences: 27780
Number of extensions: 320585
Number of successful extensions: 802
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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