Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP08_F_M08
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 173 2e-44
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 69 6e-13
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 48 1e-06
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 37 0.002
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac... 32 0.063
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 30 0.25
SPBC336.08 |spc24||spindle pole body protein Spc24|Schizosacchar... 29 0.77
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar... 28 1.0
SPBC32H8.09 |||WD repeat protein, human WDR8 family|Schizosaccha... 27 1.8
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 27 2.4
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb... 26 4.1
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 7.2
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo... 25 7.2
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom... 25 7.2
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos... 25 7.2
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph... 25 9.5
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch... 25 9.5
SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c... 25 9.5
SPCC126.14 |prp18||U5 snRNP-associated protein Prp18|Schizosacch... 25 9.5
SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce... 25 9.5
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 173 bits (420), Expect = 2e-44
Identities = 82/112 (73%), Positives = 98/112 (87%)
Frame = +3
Query: 258 ESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEA 437
E DLY ++K L+R LE L++QE +IK++ ++LK+E + AQEEVKRIQSVPLVIGQFLEA
Sbjct: 5 EEIDLYNRWKALERQLEMLDLQEGFIKEDCKSLKRELIRAQEEVKRIQSVPLVIGQFLEA 64
Query: 438 VDQNTGIVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALXDVLPPEA 593
+DQNT IVGSTTGSNY VRILST+DRELLKPSASVAL +HSNAL D+LPPEA
Sbjct: 65 IDQNTAIVGSTTGSNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEA 116
Score = 33.1 bits (72), Expect = 0.036
Identities = 13/20 (65%), Positives = 17/20 (85%)
Frame = +1
Query: 595 DSSISMLQADXKPDVQYSDI 654
DSSISML+ D +PDV Y+D+
Sbjct: 117 DSSISMLRPDERPDVSYADV 136
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 68.9 bits (161), Expect = 6e-13
Identities = 36/101 (35%), Positives = 63/101 (62%), Gaps = 3/101 (2%)
Frame = +3
Query: 288 KLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSV---PLVIGQFLEAVDQNTGI 458
K+QR+ + L ++EEY+++++R LK + QEE R+ + P+ +G E +D + I
Sbjct: 71 KMQRIHDHLLMEEEYVQNQER-LKPQDERTQEERNRVDEIRGTPMSVGTLEEIIDDDHAI 129
Query: 459 VGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALXDVL 581
V ST G YYV I+S +D+++L+P SV LH + ++ +L
Sbjct: 130 V-STAGPEYYVSIMSFVDKDMLEPGCSVLLHHKAMSIVGLL 169
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 48.0 bits (109), Expect = 1e-06
Identities = 29/115 (25%), Positives = 56/115 (48%)
Frame = +3
Query: 258 ESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEA 437
E + KYK + + + ++ R+L K+Y ++++K +QSV +IG+ L+
Sbjct: 3 ERDTALEKYKSYLLQHREWDSKLKDLRFGNRDLVKKYDKTEDDIKSLQSVGQIIGEVLKQ 62
Query: 438 VDQNTGIVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALXDVLPPEARQL 602
+D IV +++G Y V + +D+ L V+L + + +LP E L
Sbjct: 63 LDSERFIVKASSGPRYVVGCRNNVDQSHLVQGVRVSLDMTTLTIMRILPREVDPL 117
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 37.1 bits (82), Expect = 0.002
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Frame = +3
Query: 339 DEQRN-LKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTGIVGSTTGSNYYVRILSTIDR 515
+ QRN L +EE++ +Q +G+ ++ + +N +V Y V I ID
Sbjct: 42 EAQRNGLNARVRLLREEIQLLQEPGSYVGEVIKTMGKNKVLVKVHPEGKYVVDISPDIDI 101
Query: 516 ELLKPSASVALHKHSNALXDVLP 584
+ +KP+ VAL S L +LP
Sbjct: 102 KEIKPNIRVALRNDSYQLIKILP 124
>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
Alg6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 506
Score = 32.3 bits (70), Expect = 0.063
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = -2
Query: 470 GAANYACILINCLK-KLSNDKRNRLYALYFFLCMQIFFLQVSLFIFNVLFLY 318
G Y C+++ + ++N +N+ A FF C+ + F Q++L+ +F Y
Sbjct: 182 GHFQYNCVMLGLVMYAIANLLKNQYVAATFFFCLALTFKQMALYFAPPIFFY 233
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 30.3 bits (65), Expect = 0.25
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +1
Query: 589 KPDSSISMLQADXKPDVQYSDI 654
K D S++M+Q + KPDV Y D+
Sbjct: 160 KIDPSVTMMQVEEKPDVTYGDV 181
>SPBC336.08 |spc24||spindle pole body protein
Spc24|Schizosaccharomyces pombe|chr 2|||Manual
Length = 198
Score = 28.7 bits (61), Expect = 0.77
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +3
Query: 240 QSFDELESEDLYTKYKKLQRMLEFLEVQEEYIKD--EQRNLKKEYLHAQEEVKRI 398
QSF E E E TK+K L R LE E +K E +E L ++E RI
Sbjct: 36 QSFREKELEGSQTKFKVLSRKLEISTQAMESLKQTAESSQHAEEILSREKEKFRI 90
>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 682
Score = 28.3 bits (60), Expect = 1.0
Identities = 12/27 (44%), Positives = 20/27 (74%)
Frame = -2
Query: 401 LYALYFFLCMQIFFLQVSLFIFNVLFL 321
+++L+FFLCM+ FF +++ F LFL
Sbjct: 360 IFSLFFFLCMRNFFPGFTIY-FPALFL 385
>SPBC32H8.09 |||WD repeat protein, human WDR8
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 27.5 bits (58), Expect = 1.8
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = -3
Query: 391 FTSSCACKYSFFKFRCSSLMYSSCTSKNSNILW 293
F C S +F C ++ TSK N+LW
Sbjct: 313 FPEPSFCSASKIRFNCDETYAATITSKYPNVLW 345
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 27.1 bits (57), Expect = 2.4
Identities = 20/69 (28%), Positives = 33/69 (47%)
Frame = +3
Query: 189 EKDDQVTDSKGLAFAGPQSFDELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEY 368
EK+ + K L A + E+E L + Q+ LE +E K E++ LK+E
Sbjct: 593 EKEKKRDKKKQLKLAKEEERQRREAERLAEQ--AAQKALEAKRQEEARKKREEQRLKREQ 650
Query: 369 LHAQEEVKR 395
Q+E++R
Sbjct: 651 EKKQQELER 659
>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 347
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 357 KKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTGI 458
K ++ A E+ + VPL +F + VDQN G+
Sbjct: 51 KSKHSEAVVEILKSAKVPLKNKEFSDLVDQNIGV 84
>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 412
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +3
Query: 387 VKRIQSVPLVIGQFLEAVDQN 449
+K+ +SVP + GQF+E V+ N
Sbjct: 193 LKKSKSVPRLRGQFMEPVEHN 213
>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.4 bits (53), Expect = 7.2
Identities = 18/75 (24%), Positives = 35/75 (46%)
Frame = +3
Query: 183 LPEKDDQVTDSKGLAFAGPQSFDELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKK 362
L +K + +TD+ +S +E S+++ TK + + + +K E+ L +
Sbjct: 317 LQDKLELLTDAYNREKRRARSLEERMSKEMLTKLGESNVDDGMAASRYDTVKREKERLSE 376
Query: 363 EYLHAQEEVKRIQSV 407
QE+ + IQSV
Sbjct: 377 HLKSLQEQYEHIQSV 391
>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 649
Score = 25.4 bits (53), Expect = 7.2
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +3
Query: 264 EDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQS 404
E+ + QR +E QEE IK+E+ ++E +EEV +S
Sbjct: 333 EEAVKSLPETQRTTSRIETQEEEIKEEEMEGEEE--EEEEEVPNYES 377
>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 25.4 bits (53), Expect = 7.2
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = +3
Query: 381 EEVKRIQSVPLVIGQFLEAVDQNTGIVGSTTGSNYYVRILSTIDRELLKPSASVALHK 554
EE Q P +GQ+ + + Q I Y++RI+ ++LK S + +HK
Sbjct: 212 EENLDFQESPHYLGQYKKLLSQAMDIF-----KPYFIRIIKQTTDQVLKDSKKMDVHK 264
>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
Phf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 538
Score = 25.0 bits (52), Expect = 9.5
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Frame = +3
Query: 258 ESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEA 437
ES+ TK+ E +EV ++Y++ E+ EYL QE + V V+ F A
Sbjct: 378 ESQSKTTKHSTSLPSTEPVEVDKQYMESEKIPTIDEYL--QEYSNEDEIVLQVLESFPAA 435
Query: 438 VDQNTGIVGSTTGSNYYVRIL--STIDREL 521
V +T + +T + Y R + S I R L
Sbjct: 436 VSFST--ITNTIQAKYSNRKIKNSNITRSL 463
>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
3|||Manual
Length = 923
Score = 25.0 bits (52), Expect = 9.5
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = -3
Query: 214 ESVTWSSFSGKIIPISSIVSIAKRFRVLSDY--YLII*NVFYTETKCSRRSNLNIRT*LL 41
E VTW +IP S+ SI + S Y Y ++ ++ Y K + +L R +L
Sbjct: 355 EMVTWDPVLETVIPYGSLRSIFEDSSSHSSYSPYYVVFDILYLNGKSLVKYSLESRRRIL 414
>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 581
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 589 KPDSSISMLQADXKPDVQYSD 651
K D + +Q+D KPDV+ SD
Sbjct: 260 KEDFDLKDMQSDIKPDVEKSD 280
>SPCC126.14 |prp18||U5 snRNP-associated protein
Prp18|Schizosaccharomyces pombe|chr 3|||Manual
Length = 343
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +3
Query: 318 VQEEYIKDEQRNLKKEYLHAQEEVK 392
+QE+ KDEQR LKK L +E +K
Sbjct: 41 LQEKQQKDEQRELKKRKLE-EERLK 64
>SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 262
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 282 YKKLQRMLEFLEVQEEYIKDEQRNLKKEYLH 374
Y+++QR+LE LE++E D L+ Y+H
Sbjct: 95 YQQIQRLLEKLEIKEGNYGDGYA-LQPSYIH 124
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,416,858
Number of Sequences: 5004
Number of extensions: 46446
Number of successful extensions: 151
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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