Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_M07
         (356 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0767 + 21004373-21004545,21004656-21004711,21004800-210048...    28   2.5  
06_01_1150 + 9720227-9720858,9720948-9721118,9721199-9721403           27   5.7  

>08_02_0767 +
           21004373-21004545,21004656-21004711,21004800-21004882,
           21004942-21005112,21005806-21005997
          Length = 224

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 147 RHLYSHRRPCQRPLHC 100
           R L+  R PC RP+HC
Sbjct: 58  RRLWQQRPPCLRPIHC 73


>06_01_1150 + 9720227-9720858,9720948-9721118,9721199-9721403
          Length = 335

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +1

Query: 46  DFVIVHQNQNNHEHQLKITVKWPLTRSAMRIKVTPKV 156
           DF++   NQ  H   L IT KW L    +   + PK+
Sbjct: 259 DFIMCAYNQQRHWILLVITPKWSLVH-YLNSNINPKI 294


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,461,410
Number of Sequences: 37544
Number of extensions: 34176
Number of successful extensions: 128
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 542368620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)