Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_M03
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    29   0.77 
SPAC6F6.05 |||oligosaccharyltransferase epsilon subunit |Schizos...    28   1.0  
SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   1.8  
SPAC1142.05 |ctr5||copper transporter complex subunit Ctr5 |Schi...    27   2.4  
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    27   2.4  
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|...    26   5.5  
SPCC11E10.07c |||translation initiation factor eIF2B alpha subun...    26   5.5  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   7.2  
SPAC16C9.01c ||SPAC4G8.14c|carbohydrate kinase |Schizosaccharomy...    25   9.5  

>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 28/89 (31%), Positives = 45/89 (50%)
 Frame = +3

Query: 72  SESWPSAGCLSSSFWSWHLRVRAWLSTTTVTM*MRISACSSPVPLSGTSSYSLVRPRAT* 251
           S S  S+   SSS +   +    ++ST TVT     S+ SS VP S T++ +L   +A+ 
Sbjct: 226 SSSSSSSRPSSSSSFITTMSSSTFISTVTVTPSSSSSSTSSEVP-SSTAALALNASKAS- 283

Query: 252 CRLLHTNGSTSSIRWSVLPCSSLAVPLLL 338
               HT+ +  +I   V+ C + AV + L
Sbjct: 284 ---NHTSLNAGAIVGIVIGCVAFAVVMAL 309


>SPAC6F6.05 |||oligosaccharyltransferase epsilon subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 122

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = +2

Query: 158 SYNVDADIGMLVTGTFVGYLIIFAGAAAGYIMQT---PSHKRIDIFYSLVG 301
           SYN + ++ +     F+G+L++  G   GY +     P +  +  F S VG
Sbjct: 17  SYNENTNLSLKTIDAFLGFLVVVGGLQFGYALLVGTYPFNSFLSGFISCVG 67


>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 103

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -1

Query: 545 SNPNKTALYLYAAFEILF*LCSSILCT*FSL 453
           SNPNK ++Y+Y  F     LCS  L    SL
Sbjct: 72  SNPNKFSIYIYIYFFFYSFLCSPYLFKYISL 102


>SPAC1142.05 |ctr5||copper transporter complex subunit Ctr5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 173

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +2

Query: 143 ALHYHSYNVDADIGMLVTGTFVGYLII--FAGAAAGYIM 253
           A  Y S+ + A I ML+  +F GY I+  F GA  G+ +
Sbjct: 116 AAMYSSFYLSATILMLIVMSFNGYAILFGFVGAWIGFFL 154


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1283

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 506 MLHTNTMLSY*DYYGPPNNLNSTAITVTS 592
           ++HTNT +S       P N N+T +++T+
Sbjct: 95  LIHTNTSISKPSQTATPQNTNTTQVSLTN 123


>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
           Met9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -2

Query: 340 VNNNGTASDEQGNTDQRI-EDVDPFV*RSLHYVARGRTSEYDEVPDKGTGDEHA 182
           V+ N        + D+RI E V P   R+ +     RT ++DE+P    GD  +
Sbjct: 302 VDTNNVELTNASSQDRRINEGVRPIFWRTRNESYVSRTDQWDELPHGRWGDSRS 355


>SPCC11E10.07c |||translation initiation factor eIF2B alpha
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 226 RWCGRGLHNADSFTQTDRHLLFAGRCCLVRR*RC 327
           R+  R LH+   F Q  RHL+  G+  + R   C
Sbjct: 88  RFVTRSLHDVGDFEQCKRHLVENGKLFIQRARAC 121


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 251  MQTPSHKRIDIFYSLVGVALFVASGAII 334
            M TP  K  ++F+S V +   +A+GAII
Sbjct: 1612 MDTPRAKFTNVFFSDVLIPALLAAGAII 1639


>SPAC16C9.01c ||SPAC4G8.14c|carbohydrate kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 311 FVASGAIIIDRFQHYGKSEIKDKNLAKASLAIINGAI 421
           FV +G  IID  +  G  +IKD      S A+I   +
Sbjct: 10  FVTTGMFIIDEIEFDGGKKIKDIIGGAGSFALIGARL 46


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,561,664
Number of Sequences: 5004
Number of extensions: 51855
Number of successful extensions: 140
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)